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Proteome protein analysis tools

Von Haller, P.D., Yi, E., Donohoe, S., Vaughn, K., Keller, A., Nesvizhskii, A.I., Eng, J., Li, X.J., Goodlett, D.R., Aebersold, R., Watts, J.D. (2003). The Application of New Software Tools to Quantitative Protein Profiling Via Isotope-coded Affinity Tag (ICAT) and Tandem Mass Spectrometry II. Evaluation of Tandem Mass Spectrometry Methodologies for Large-Scale Protein Analysis, and the Application of Statistical Tools for Data Analysis and Interpretation. Mol. Cell. Proteomics 2, 428 -42. [Pg.288]

The comprehensive molecular biology server, ExPASy (Expert Protein Analysis System), provides Proteomic tools (http //www.expasy.ch/tools) that can be accessed directly or from the ExPASy home page by selecting Identification and Characterization under Tools and Software Packages. The Protein identification and characterization tools of the Proteomics tools (Figure 11.4) provide facilities to ... [Pg.224]

The CMS Molecular Biology Resource [168] at the San Diego Supercomputer Center contains an excellent compendium of Web-accessible bioinformatics tools. The ExPASy (Expert Protein Analysis System] proteomics server of the Swiss Institute of Bioinformatics [169] and the EBI Toolbox are two other popular tool collections. Another useful resource is Herbert Mayer s Bioinformatics World Web site, which contains a comprehensive collection of bioinformatics tools and software, including evaluations, comments, and tutorials. [Pg.65]

The realignment of focus of the scientific community on protein function has generated a strong need for novel, high-throughput analysis tools and systems that can determine the abundance, post-translational modifications, and biological function of the proteome encoded by the human genome. [Pg.129]

Characterization under Tools and Software Packages. The Protein identification/charac-terization and sequence analysis tools of the Proteomics tools provide facilities to ... [Pg.611]

Expert Protein Analysis System (ExPASy) ExPASy Proteomic tools ... [Pg.653]

The analysis of adenylylation requires preparatively adenylylated proteins in order to determine the site of the PTM, to determine the structure of the modified proteins, and to establish the functional consequences for Rabl-activity. Also, the systematic investigation of adenylylation in live cells and their distribution among different prokaryotic and eukaryotic proteomes requires specific tools... [Pg.143]

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See also in sourсe #XX -- [ Pg.22 ]



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