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Secondary protein structure tertiary folding simulation

The feedback-optimized parallel tempering technique [26] outlined in the previous section has recently been applied to study the folding of the 36-residue chicken villin headpiece sub-domain HP-36 [27]. Since HP-36 is one of the smallest proteins with well-defined secondary and tertiary structure [28] and at the same time with 596 atoms still accessible to numerical simulations, it has recently attracted considerable interest as an example to test novel numerical techniques, including molecular dynamics [29,30] and Monte Carlo [31,32] methods. The experimentally determined structure [28] which is deposited in the Protein Data Bank (PDB code Ivii) is illustrated in the left panel of Fig. 6. [Pg.611]


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Fold protein structure

Folded Protein Structures

Folded structure

Protein secondary

Protein secondary structure

Protein tertiary

Protein tertiary structure

Secondary structure

Secondary tertiary

Simulations proteins

Structures Tertiary structure

Tertiary protein structure simulations

Tertiary structural folds

Tertiary structure

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