Secondary protein structure size-dependent potential

Part a lists old results part b lists results using the size-dependent potential and X-ray-derived secondary structure part c lists results using the size-dependent potential and ideal secondary structure. The number of proteins Aprot is listed in column 2 the number of cases that converged within a specified RMSD fiom the native (<4A, <5A, <6A, or<7A) iV onv is listed in columns 3, 6, 9, and 12. (Note that the rank < 4 A was not calculated for the old results, so a — is shown). Also listed are the average and maximum rank of converged clusters within each RMSD range. 

Having established that our new size-dependent potential is quite effective for generating low-resolution structures of proteins below 100 residues using secondary structure derived from PDB coordinates, we next ask what the effect is of using ideal torsional angles for helices and strands as opposed to PDB-derived... 

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