Protein extent

Hayaishi and co-workers (149) were the first to observe that when a nuclear preparation from rat liver was incubated with radiolabeled NAD, the resulting newly synthesized poly(ADP-ribose) was associated with histones Hi, H2A, H2B, and H3 (149). As summarized in the previous section, other groups have corroborated this observation and extended it to include nonhistone nucleosomal proteins (2, 64, 84, 90, 164,178,179, 200, 215, 229). Differences in techniques for isolation of poly ADP-ribosylated proteins and the presence of poly(ADP-ribose) degradative enzymes [poly(ADP-ribose) glycohydrolase and various phosphodiesterases] may explain some of the conflicting reports as to primary acceptor protein, extent of modification, and length of polymer. 

Naturally occurring molecular ensembles such as proteins from photosyntlietic systems (plants, algae, photosyntlietic bacteria, etc) are usually relatively rigid systems tliat contain various cliromophores and hold tliem at fixed positions and orientations relative to each otlier. That is why, despite tire numerous energy jumps between tire cliromophores, tlie resulting emitted fluorescence is polarized. The extent of tliis polarization tlius affords invaluable infonnation about tlie internal stmcture of molecular complexes. 

Studies of electrical interactions in proteins, polypeptides, and amino acids started over 60 years ago [1]. To a large extent, electrostatic properties of proteins are determined by the ability of certain amino acids to exchange protons with their environment and the dependence of these processes on pH. The proton occupies a special position as a promoter and iiuxliator in... 

In molecular mechanics and molecular dynamics studies of proteins, assig-ment of standard, non-dynamical ionization states of protein titratable groups is a common practice. This assumption seems to be well justified because proton exchange times between protein and solution usually far exceed the time range of the MD simulations. We investigated to what extent the assumed protonation state of a protein influences its molecular dynamics trajectory, and how often our titration algorithm predicted ionization states identical to those imposed on the groups, when applied to a set of structures derived from a molecular dynamics trajectory [34]. As a model we took the bovine... 

We shall see in Sec. 9.10 that sedimentation and diffusion data yield experimental friction factors which may also be described-by the ratio of the experimental f to fQ, the friction factor of a sphere of the same mass-as contours in solvation-ellipticity plots. The two different kinds of contours differ in detailed shape, as illustrated in Fig. 9.4b, so the location at which they cross provides the desired characterization. For the hypothetical system shown in Fig. 9.4b, the axial ratio is about 2.5 and the protein is hydrated to the extent of about 1.0 g water (g polymer)". ... 

R/Ro)soiv(f/fo)ellip = n + (mib/m2)(P2/Pi)] (f/fo)eiiip-Briefly justify this expansion of the (f/fo oiv factor. Assuming these particles were solvated to the extent of 0.26 g water (g protein)", calculate (f/fo)eiHp-For prolate ellipsoids of revolution (b/a < 1), Perrin has derived the following expression ... 

Plant proteins are less expensive than animal proteins and are used in formula quantities at the greatest extent possible while still retaining the maximum desirable food characteristics. Plant proteins are extremely important in the nutrition of pets. 

Several aspects affect the extent and character of taste and smell. People differ considerably in sensitivity and appreciation of smell and taste, and there is lack of a common language to describe smell and taste experiences. A hereditary or genetic factor may cause a variation between individual reactions, eg, phenylthiourea causes a bitter taste sensation which may not be perceptible to certain people whose general abiUty to distinguish other tastes is not noticeably impaired (17). The variation of pH in saUva, which acts as a buffer and the charge carrier for the depolarization of the taste cell, may influence the perception of acidity differently in people (15,18). Enzymes in saUva can cause rapid chemical changes in basic food ingredients, such as proteins and carbohydrates, with variable effects on the individual. 

Mode of Motion. Nicotine, anabasine, and imidocloprid affect the ganglia of the insect central nervous system, faciUtating transsynaptic conduction at low concentrations and blocking conduction at higher levels. The extent of ionisation of the nicotinoids plays an important role in both their penetration through the ionic barrier of the nerve sheath to the site of action and in their interaction with the site of action, which is befleved to be the acetylcholine receptor protein. There is a marked similarity in dimensions between acetylcholine and the nicotinium ion. 

Dmg distribution into tissue reservoirs depends on the physicochemical properties of the dmg. Tissue reservoirs include fat, bone, and the principal body organs. Access of dmgs to these reservoirs depends on partition coefficient, charge or degree of ionization at physiological pH, and extent of protein binding. Thus, lipophilic molecules accumulate in fat reservoirs and this accumulation can alter considerably both the duration and the concentration—response curves of dmg action. Some dmgs may accumulate selectively in defined tissues, for example, the tetracycline antibiotics in bone (see Antibiotics,tetracyclines). 

Currently available proteins are all deficient to greater or lesser extent in one or more of the essential amino acids. The recently advanced plastein reaction (229) has made it possible to use protein itself as substrate and to attach amino acid esters to the protein with high efficiency. By this method, soy bean protein (which is deficient in methionine) has been improved to the extent of having covalently attached L-methionine at 11%. 

Measuring Protein Sta.bihty, Protein stabihty is usually measured quantitatively as the difference in free energy between the folded and unfolded states of the protein. These states are most commonly measured using spectroscopic techniques, such as circular dichroic spectroscopy, fluorescence (generally tryptophan fluorescence) spectroscopy, nmr spectroscopy, and absorbance spectroscopy (10). For most monomeric proteins, the two-state model of protein folding can be invoked. This model states that under equihbrium conditions, the vast majority of the protein molecules in a solution exist in either the folded (native) or unfolded (denatured) state. Any kinetic intermediates that might exist on the pathway between folded and unfolded states do not accumulate to any significant extent under equihbrium conditions (39). In other words, under any set of solution conditions, at equihbrium the entire population of protein molecules can be accounted for by the mole fraction of denatured protein, and the mole fraction of native protein,, ie. 

Proteins. Proteias are especially significant ia imitation dairy foods with respect to nutritional and physical properties of the product (5). The relative significance of the nutritional quaUty of the proteia depends upon product type and the extent to which the product contributes to the total proteia iatake of a given population. Thus, proteia quaUty is extremely important ia imitation milk, significant ia imitation cheese, and less significant ia coffee whiteners and whipped toppiags. 

Phosphates, which react with calcium to reduce the calcium ion activity, assist in stabilizing calcium-sensitive proteins, eg caseinate and soy proteinate, during processing. Phosphates also react with milk proteins. The extent of the reaction depends upon chain length. Casein precipitates upon addition of pyrophosphates, whereas whey proteins do not. Longer-chain polyphosphates cause the precipitation of both casein and whey proteins. These reactions are complex and not fully understood. Functions of phosphates in different types of dairy substitutes are summarized in Table 9 (see also Food additives). 

After screening for toxicity, identification and/or quantification assays may need to be carried out if the screening method is not specific for the cyanobacterial toxin(s) under investigation. Suitable assays for these purposes include the physicochemical assays, HPLC, MS, and CE, and to some extent the immunoassays and protein phosphatase inhibition assays summarized in Section 2. 

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