Protein conformational changes, monitoring techniques

Equilibrium Denaturation. A variety of different techniques can be employed to monitor protein conformational changes in the presence of denaturants. Activity measurements reflect the extent of alterations of the active site environment. However, enzyme activity measurements may be affected the presence of denaturant in the assay mixture. The denaturation curves obtained by this method are difficult to inte ret and can only be taken as a first approximation of the unfolding transition. U.V. difference spectra indicate conformational changes by monitoring the degree of solvent exposure of aromatic amino-acid side chains. Finally, fluorescence intensity measurements can reveal the nature of the environment (polar, non-polar) of the four tryptophans of p-lactamase. 

Abstract. A recently developed new method to monitor reaction kinetics of intermolecular interaction is reviewed. This method is based on the measurement of the time-dependent diffusion coefficient using the pulsed-laser-induced transient grating technique. Using this method, conformation change, transient association, and transient dissociation on reactions are successfully detected. The principle and some applications to studies on changes in the intermolecular interactions of photosensor proteins (e.g., photoactive yellow protein, phototropins, AppA) in the time domain are described. In particular, unique features of this time-dependent diffusion coefficient method are discussed. 

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