Probe donor

First entry on each line is the tag. Square brackets enclose the probe donor + transfer enzyme (where applicable) or reaction. Probe organic fluorophores, nanoparticles (can be QDs as in methods 2, 3, 8, 9) or a bridging/recognition moiety. If desired, the latter can serve in a second orthogonal reaction ( piggyback strategy). See text. Biotin readout probes linked to avidin, streptavidin, anti-biotin 7[101] ... 

Much of chemistry occurs in the condensed phase solution phase ET reactions have been a major focus for theory and experiment for the last 50 years. Experiments, and quantitative theories, have probed how reaction-free energy, solvent polarity, donor-acceptor distance, bridging stmctures, solvent relaxation, and vibronic coupling influence ET kinetics. Important connections have also been drawn between optical charge transfer transitions and thennal ET. 

Figure C3.3.4 shows a schematic diagram of an apparatus tliat can be used to study collisions of tlie type described above [5, 9,12,16]. Donor molecules in a 3 m long collision cell (a cylindrical tube) are excited along tlie axis of tlie cell by a short-pulse excimer laser (typically 25 ns pulse widtli operating at 248 mil), and batli molecules are probed along tliis same axis by an infrared diode laser (wavelengtli in tlie mid-infrared witli continuous light-output...

The data obtained in tlie infrared-diode-laser-probe studies described above provides quenching infonnation at a given substrate donor energy E. By varying tlie laser excitation wavelengtli for production of vibrationally hot... 

The amino acid methionine is formed by a melhylation reaction of homo cysteine with iV-methyltetrahydrofolate. The stereochemistry of the reactior has been probed by carrying out the transformation using a donor with a "chiral methyl group" that contains protium (H), deuterium (D), and tritium (T isotopes of hydrogen. Does the methylation reaction occur with inversion oi retention of configuration ... 

Electronic effects on the reactions of [Rh(Por)h dimers and hydrides were probed by varying the porphyrin macrocycle. OEP and TPP vary considerably in their properties, with OEP being one of the strongest and TPP one of the weakest (7-donors among porphyrin derivatives. However. Rh(Por)]2, Rh(Por)H, and Rh(Por)r showed the same reactivity in a variety of reactions for both OEP and TPP, indicating that electronic effects relating to the porphyrin ligand have... 

Various strains of oral streptococci produce D-glucosyltransferases which utilize sucrose as a o-glucosyl donor in the production of soluble and insoluble D-glucans. Consequently, it may be expected that some deoxyfluoro derivatives of sucrose function as competitive inhibitors for the dextransu-crases of tooth bacteria, thus preventing decay, or at least may be used as active-site probes for the enzymes. Another aim of these researches is to find non-metabolizable sweeteners. 

Surface area around a molecule where optimum enthalpy of interactions of acceptor atoms with H-bond donor probe is realized [38, 39]... 

Surface area around a molecule where optimum enthalpy of interactions of donor atoms with H-bond acceptor probe is realized [38, 39[ Surface area around a molecule where optimum free energy of interactions of donor atoms with H-bond acceptor probe is realized [38, 39[ Sum of enthalpy values (kcalmof interactions between the acceptor atoms in a molecule and donor probe on OEASA [38, 39[ Sum of enthalpy values (kcalmof interactions between the donor atoms in a molecule and an acceptor probe on OEDSA [38, 39[... 

Edipiobe) = enthalpy factor of the probe H-bond donor 1/3... 

The solvent triangle classification method of Snyder Is the most cosDBon approach to solvent characterization used by chromatographers (510,517). The solvent polarity index, P, and solvent selectivity factors, X), which characterize the relative importemce of orientation and proton donor/acceptor interactions to the total polarity, were based on Rohrscbneider s compilation of experimental gas-liquid distribution constants for a number of test solutes in 75 common, volatile solvents. Snyder chose the solutes nitromethane, ethanol and dloxane as probes for a solvent s capacity for orientation, proton acceptor and proton donor capacity, respectively. The influence of solute molecular size, solute/solvent dispersion interactions, and solute/solvent induction interactions as a result of solvent polarizability were subtracted from the experimental distribution constants first multiplying the experimental distribution constant by the solvent molar volume and thm referencing this quantity to the value calculated for a hypothetical n-alkane with a molar volume identical to the test solute. Each value was then corrected empirically to give a value of zero for the polar distribution constant of the test solutes for saturated hydrocarbon solvents. These residual, values were supposed to arise from inductive and... 

The donor-DNA assemblies presented in Table 2 have been used to probe CT over distinct regimes of time, energetics and coupling. Is it possible to reconcile these many different experiments together within one mechanistic picture Many different theoretical treatments have been proposed, and to greater or lesser extents, these can be used to understand aspects of CT within DNA. However, many outstanding issues remain. Some are highlighted here. 

Heterocyclic nitrogen donors and their adducts with zinc chloride have been studied.623,624 A large number of other ligand systems have also been characterized, for example, zinc halide adducts of 2,2-dimethylpropane-1,3-diamine and hexamethylphosphoramide have been studied.625,626 The formation of mixed ligand complexes with chloride and substituted pyridines has been studied.627 The zinc tris(pyridyl) chloride anion has also been structurally characterized.628 Manganese(II) ions have been used to probe the stereochemistry in reactions of zinc halides with pyrazine.629... 

In this section, we present a unified picture of the different electronic effects that combine to determine methyl rotor potentials in the S0, Sp and D0 electronic states of different substituted toluenes. Our approach is based on analysis of ab initio wavefunctions using the natural bond orbitals (NBOs)33 of Weinhold and cowork-ers. We will attempt to decompose the methyl torsional potential into two dominant contributions. The first is repulsive steric interactions, which are important only when an ortho substituent is present. The second is attractive donor-acceptor interactions between CH bond pairs and empty antibonding orbitals vicinal to the CH bonds. In the NBO basis, these attractive interactions dominate the barrier in ethane (1025 cm-1) and in 2-methylpropene (1010 cm-1) see Figure 3. By analogy, donor-acceptor attractions are important in toluenes whenever there is a substantial difference in bond order between the two ring CC bonds adjacent to the C-CH3 bond. Viewed the other way around, we can use the measured methyl rotor potential as a sensitive probe of local ring geometry. 

Also recently, Liao and collaborators [89] proposed a homogeneous noncompetitive assay of a protein in biological samples based on FRET by using its tryptophan residues as intrinsic donors and its specific fluorescent ligand as the FRET acceptor, which was defined as an analytical FRET probe. To evaluate this method, a naphthylamine derivative, namely /V-biotinyl-/V -(l -naphthylj-ethylene-diamine (BNEDA) 33 was used as an analytical FRET probe for the homogeneous noncompetitive assay of streptavidin. 

---