Polyketide aromatic compounds

Kosan Biosciences was formed almost 6 years ago, founded on an interest in polyketides, microbial metabolite-based drugs. Polyketides have many diverse chemical structures including erythromycin, which will be mentioned again later. These chemicals include fused-ring aromatic compounds, compounds decorated with sugars, and compounds with large stretches of double bonds. Each of these compounds has different biological activities and utilities, but they are all made in nature by very similar biochemistry. 

Collie s hypothesis that aromatic compounds are made biologically from ethanoic acid was greatly expanded by A. J. Birch to include an extraordinary number of diverse compounds. The generic name acetogenin has been suggested as a convenient classification for ethanoate (acetate)-derived natural products, but the name polyketides also is used. Naturally occurring aromatic compounds and quinones are largely made in this way. An example is 2-hydroxy-6-methylbenzoic acid formed as a metabolite of the mold Penicillium urticae ... 

The fatty acid pathway or, as we should call it now, the acyl polymalonate pathway, also gives rise to an inexhaustible variety of aromatic and other compounds belonging to the family of the polyketides. You saw in Chapter 50 how the shikimic acid pathway makes aromatic compounds but the compounds below are from the polyketide route. 

Aromatic natural products of polyketide origin are less prevalent in plants compared with microorganisms. The majority of the plant constituents that contain aromatic stmctures are known to arise from the shikimate pathway (see below). Unlike those derived from the shikimate pathway, aromatic products of the polyketide pathway invariably contain a meta oxygenation pattern because of their origin from the cyclization of polyketides. Phenolic compounds such as chrysophanol-anthrone (Bl), and emodin-anthrone (B2), and the anthraquinones, aloe-emodin (B3) and emodin (B4) (Fig. 2), are products of the polyketide pathway and are found to occur in some plants of the genera Cassia (Leguminosae) (21), Rhamnus (Rhamnaceae) (22), and Aloe (Liliaceae) (23). The dimer of emodin-anthrone (B2), namely hypericin, (B5) is a constituent of the antidepressant herbal supplement, St. John s wort (Hypericumperforatum, Hy-pericaceae) (24). 

Cyclization of the polycarbonyl chain to form aromatic compounds is a very common biosynthetic process. These aromatic compounds can then undergo various further biosynthetic transformations, including ring cleavage reactions. Some polyketides are pigments of fungi and others are serious mycotoxins and these are described in Chapters 7 and 9, respectively. 

As the polyketide chains become longer, there are sometimes several ways in which the polyketide chain may be folded to generate the same final structure. Thomas has pointed out that apparently similar decaketide aromatic compounds are formed by one folding of the polyketide chain in fungi and by a different folding in Streptomycetes. 

In nature, the intramolecular condensation of a 1,3-dicarbonyl moiety with a keto group in polyketides is an important step in the biosynthesis of aromatic compounds. Biomimetic transformations of this type have been intensively investigated by Harris. (For a discussion, see Chapter 1.5, this volume.) In the following, the synthesis of some natural products and biologically active compounds using the Knoevenagel reaction will be described. 

Acyl-CoA thioesterase enzymes (EC 3.1.2.-), although their catalytic activity simply entails the hydrolysis of CoA and ACP thioesters to release the fatty acids and other carboxylic acids bound to them (Equation (19)), have wide and varied physiological functions that includes the regulation of fatty acid metabolism and playing a central role in the biosynthesis of polyketide and nonribosomal peptide-based metabolites (especially the macrocyclic versions) and the degradation of aromatic compounds. These enzymes are thoroughly discussed in several recent reviews as well as the relevant chapters of this series that include fatty acids, polyketides, and nonribosomal peptide biosynthesis ° ° (see Chapters 1.05,1.02, and 5.19) therefore, only a brief overview of the structural and mechanistic diversity of acyl-CoA and acyl-ACP thioesterases is provided in this section. 

The formation of orcin 7 in addition to 6 is the result of a subsequent deprotonation of 6 to the enolate 8 which recyclizes by an intramolecular aldol condensation. This reaction gave rise to the hypothesis of the biosynthesis of aromatic compounds from polyketides (Collie 1907) [34]. 

Using these techniques (combinatorial biosynthesis) with streptomycetes, the polyketides have now been investigated, including not only the macrolides (e. g., erythromycin) but also polycyclic aromatic compounds (e.g., actinorhodin, tetracenomycins). The formation of hybrids can alter not only the size of the poly ketide skeleton, its stereochemistry or its functionality but also enzyme systems of the later steps of biosynthesis such as, e. g., oxygenases or glycosy Itrans-ferases. In practice major difficulties arise because each intermediate in the biosynthetic sequence is a substrate for the following enzyme thus if a changed substrate is not accepted by the respective enzyme the biosynthesis breaks down. 

Aromatic biosynthesis, aromatizatioa biosynthesis of compounds containing the benzene ring system. The most important mechanisms are 1. the shi-kimate/chorismate pathway, in which the aromatic amino acids, L-phenylalanine, L-tyrosine and L-trypto-phan, 4-hydroxybenzoic acid (precursor of ubiquinone), 4-aminobenzoie acid (precursor of folic acid) and the phenylpropanes, including components of lignin, cinnamic acid derivatives and flavonoids are synthesized and 2. the polyketide pathway (see Polyke-tides) in which acetate molecules are condensed and aromatic compounds (e.g. 6-methylsalicylic acid) are synthesized via poly-fl-keto acids. Biosynthesis of flavonoids (e.g. anthocyanidins) can occur by either pathway. 

Macrophomate synthase enzyme (MPHS), isolated from the fungus Macrophoma com-melinae, catalyzes the Diels-Alder cycloaddition between 2-pyrones 42 and decarboxylated oxalacetic acid 43 in aqueous buffered medium at pH 7.0, giving the benzoates 44 (Scheme 5.11). These types of aromatic compounds are commonlybiosynthesized by either a shiki-mate or polyketide pathway and therefore the reaction depicted in Scheme 5.11 supports the fact that the Diels-Alder reaction takes place in biosynthesis. 

Lichens had to evolve diverse biosynthetic pathways to produce such complex arrays of secondary metabolites polyketide, shikimic acid, and mevalonic acid pathways. Most of the lichen substances are phenolic compounds. Polyketide-derived aromatic compounds, depsides, depsidones, dibenzofurans, xanthones, and naphthoquinones, are of great interest. Compounds from other pathways are esters, terpenes, steroids, terphenylquinones, and pulvinic acid (Fahselt 1994 Cohen and Towers 1995 Muller 2001 Brunauer et al. 2006, 2007 Stocker-Worgotter and Elix 2002 Johnson et al. 2011 Manojlovic et al. 2012). So, many lichens and lichen products have proved to be a source of important secondary metabolites for food and pharmaceutical industries (Huneck 1999 Oksanen 2006)... 

These findings gave rise to the postulate of a polyketide pathway operating in the biosynthesis of aromatic compounds (Collie [57]). 

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