Peptides electrostatic interactions hydrophobic

Hydrophobic and electrostatic properties of these lipopeptides show synergistic effects upon binding with membranes.1311 Due to the long stretch of basic amino acids the electrostatic interaction of the K-Ras4B peptide with negatively charged vesicles results in an approx. 103-fold increase in binding compared with a neutral membrane. 

Peptides larger than 10 to 20 residues adopt conformations in solution through the interplay of hydrogen bonding, electrostatic and hydrophobic interactions, positioning of polar residues on the solvated surface of the polypeptide, and sequestering of hydrophobic residues in the nonpolar interior. Protein shape is dynamic, changing continuously in response to the solvent environment. The retention process in RPLC is initiated as the protein approaches the stationary-phase surface. Structured water associated at the phase surface and adjacent to hydrophobic contact surfaces on the polypeptide is released into the bulk mobile... 

Interactions between the solutes and the capillary wall also have a negative effect on the efficiency in capillary zone electrophoresis. Both hydrophobic interactions and electrostatic interactions of cations with the negatively charged capillary wall can be the cause of solute adsorption. Significant adsorption has been found for high-molecular-weight species, e.g., peptides and proteins. Because of the increased surface-area-to-volume ratio of narrow-bore capillaries, this effect is even more pronounced. 

Several different analytical and ultra-micropreparative CEC approaches have been described for such peptide separations. For example, open tubular (OT-CEC) methods have been used 290-294 with etched fused silicas to increase the surface area with diols or octadecyl chains then bonded to the surface.1 With such OT-CEC systems, the peptide-ligand interactions of, for example, angiotensin I-III increased with increasing hydrophobicity of the bonded phase on the capillary wall. Porous layer open tubular (PLOT) capillaries coated with anionic polymers 295 or poly(aspartic acid) 296 have also been employed 297 to separate basic peptides on the inner wall of fused silica capillaries of 20 pm i.d. When the same eluent conditions were employed, superior performance was observed for these PLOT capillaries compared to the corresponding capillary zone electrophoresis (HP-CZE) separation. Peptide mixtures can be analyzed 298-300 with OT-CEC systems based on octyl-bonded fused silica capillaries that have been coated with (3-aminopropyl)trimethoxysilane (APS), as well as with pressurized CEC (pCEC) packed with particles of similar surface chemistry, to decrease the electrostatic interactions between the solute and the surface, coupled to a mass spectrometer (MS). In the pressurized flow version of electrochromatography, a pLC pump is also employed (Figure 26) to facilitate liquid flow, reduce bubble formation, and to fine-tune the selectivity of the separation of the peptide mixture. 

Many pharmaceutical preparations contain multiple components with a wide array of physico-chemical properties. Although CZE is a very effective means of separation for ionic species, an additional selectivity factor is required to discriminate neutral analytes in CE. Terabe first introduced the concept of micellar electrokinetic capillary chromatography (MEKC) in which ionic surfactants were included in the running buffer at a concentration above the critical micelle concentration (CMC) [17], Micelles, which have hydrophobic interiors and anionic exteriors, serve as a pseudostation-ary phase, which is pumped electrophoretically. Separations are based on the differential association of analytes with the micelle. Interactions between the analyte and micelles may be due to any one or a combination of the following electrostatic interactions, hydrogen bonding, and/or hydro-phobic interactions. The applicability of MEKC is limited in some cases to small molecules and peptides due to the physical size of macromolecules... 

In asi-casein, it is arguable that because the hydrophobic interaction surfaces are well separated from Ca2+ ion-binding sites, the electrostatic and hydrophobic free energies of association can be treated as separate and additive, leading to the Z2 dependence of the rate of aggregation under many circumstances. Likewise, the nearly bifunctional nature of the aggregation reaction is consistent with the formation of linear polymers, as observed in the absence of Ca2+ (Thurn etal., 1987b), and may involve the apposition of hydrophobic surfaces formed from the N- and C-terminal peptides. 

That study has proved insights into the role of hydrophobic, hydrogen bonding and electrostatic interactions to the stability of the peptide antibiotic-nucleic acid complex in solution (97). 

The arrangement of the proteins within the membrane seems to depend to some extent on the electrostatic surface potential and interface permittivity. It is influenced by electrostatic interaction between the proteins, polar head groups of the phospholipid and ions within the aqueous medium of the membrane surface. This can be affected by exogenous molecules such as drugs. Phospholipid-induced conformational change in intestinal calcium-binding protein in the absence and presence of Ca2+ has been described [37]. There is, however, no doubt that hydrophobic interactions between peptides and membrane interfaces play an important role. A general frame-... 

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