Nucleophilic addition peptide-catalyzed

Kostic et al. recently reported the use of various palladium(II) aqua complexes as catalysts for the hydration of nitriles.456 crossrefil. 34 Reactivity of coordination These complexes, some of which are shown in Figure 36, also catalyze hydrolytic cleavage of peptides, decomposition of urea to carbon dioxide and ammonia, and alcoholysis of urea to ammonia and various carbamate esters.420-424, 427,429,456,457 Qggj-jy palladium(II) aqua complexes are versatile catalysts for hydrolytic reactions. Their catalytic properties arise from the presence of labile water or other solvent ligands which can be displaced by a substrate. In many cases the coordinated substrate becomes activated toward nucleophilic additions of water/hydroxide or alcohols. New palladium(II) complexes cis-[Pd(dtod)Cl2] and c - Pd(dtod)(sol)2]2+ contain the bidentate ligand 3,6-dithiaoctane-l,8-diol (dtod) and unidentate ligands, chloride anions, or the solvent (sol) molecules. The latter complex is an efficient catalyst for the hydration and methanolysis of nitriles, reactions shown in Equation (3) 435... 

The next milestone in the realm of enantioselective organocatalysis was reached by Inoue and coworkers, who elegantly modernized the cyanohydrin reaction, first outlined by Bredig and Fiske in 1912. In these studies, a cyclic histidine-containing dipeptide (4) catalyzed the HCN addition to aromatic aldehydes with high enantioselectivities (97% ee) [Eq. (11.4)] a result that effectively paved the way for the field of peptide-catalyzed nucleophilic addition to aldehydes and imines ... 

Stage 2 Water adds to the carbonyl group of the peptide bond. The rate of this nucleophilic addition is accelerated by coordination of the carbonyl oxygen to Zn and/or to one of the N—protons of Arg-127 (not shown). The product is a tetrahedral intermediate stabilized by coordination to zinc. Stabilization of the tetrahedral intermediate may be the major factor for the rapid rate of the carboxypeptidase-catalyzed hydrolysis. 

Only very few among the common amino acids possess a pK within the range 5.8-7.0. Therefore, the imidazole ring of histidine was suspected very early to represent the group responsible for nucleophilic attack on the substrate (38). The pK of free imidazol is 6.9 (39) that of imidazol, contained in histidine or its peptides, varies between 5.6 and 7.1 (40). Imidazol is well known to form unstable acyl derivatives, which undergo spontaneous hydrolysis because of the presence of the resonating triad unit —-N—C= N— (41). In addition, imidazol and its derivatives catalyze the hydrolysis of certain esters, especially those derived from phenols (42). Likewise, the behavior of imidazol towards thio esters reflects exactly the specificity of ChE s (see IV, 4). Thus, thiol esters are split (43), whereas thiono esters are resistant (21). 

Again by analogy with peptide hydrolysis, metalloenzymes catalyzing ester hydrolysis may take advantage of additional chemical features provided by amino-acid residues present in the active-site cavity. This situation occurs with car-boxypeptidase, " which shows esterase activity in vitro. Although the rate-limiting steps for carboxylic esters and peptides may differ, several features, such as the pH dependences of cat and and the presence of two spectroscopically observable intermediates, point to substantially similar mechanisms. On the other hand, carboxylic ester hydrolysis catalyzed by carbonic anhydrase seems to rely on fewer additional features of the active-site cavity, perhaps only on the presence of a metal-coordinated hydroxide that can perform the nucleophilic attack on the carbonyl carbon atom." ... 

In addition to illustrating the mechanics of translation. Figure 26.12 is important in that it shows the mechanism of peptide bond formation as a nucleophilic acyl substitution. Both methionine and alanine are attached to their respective tRNAs as esters. In a reaction apparently catalyzed by a ribozyme, the amino group of alanine attacks the methionine carbonyl, displacing methionine from its tRNA and converting the carbonyl group of methionine from an ester to an amide function. 

As an efficient bifunctional catalyst, proline has been used as a Br0nsted acid in combination with a nucleophilic Lewis base catalyst in the asymmetric BH reaction. Miller and co-workers [119] disclosed that in the L-proline-catalyzed BH reaction of MVK and electron-deficient aldehydes the imidazole-tailed peptide 67 was an efficient co-catalyst. A matched/mismatched phenomenon of two chiral catalysts was observed in this reaction. Furthermore, Zhou and co-workers [120] synthesized various chiral amines and screened them as co-catalysts of L-proline in the BH reaction of MVK and aldehydes, revealing that chiral benzodiazepine 68 and aminoalcohol 69 were efficient catalysts. Interestingly, the intramolecular reaction shown in Scheme 9.34 could be directly catalyzed by L-proline in DMF solvent, while the addition of imidazole resulted in enhancement of the enantioselectivity with opposite configurational product [121]. A similar process was realized in the intramolecular reaction shown in Scheme 9.35 with 70 as co-catalyst of iV-methylimidazole. Moreover, Cordova and co-workers [122] reported in 2007 the first example of asymmetric aza-BH reaction between (3-mono- or disubstituted acroleins and aldimines. By utilizing L-proline as catalyst in combination with... 

Trifluoromethanesulfonic acid in the presence of anisole cleaves a number of protecting groups currently used in peptide chemistry without significant side reactions Tetraalkylammonium cyanides, which are soluble in organic solvents, catalyze Michael additions and other base-catalyzed reactions. As nucleophiles they are more powerful than NaCN . 

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