Noncovalent complex

Elucidating Mechanisms for the Inhibition of Enzyme Catalysis An inhibitor interacts with an enzyme in a manner that decreases the enzyme s catalytic efficiency. Examples of inhibitors include some drugs and poisons. Irreversible inhibitors covalently bind to the enzyme s active site, producing a permanent loss in catalytic efficiency even when the inhibitor s concentration is decreased. Reversible inhibitors form noncovalent complexes with the enzyme, thereby causing a temporary de-... 

In humans, the hypothalamic-derived protein and the hormone noncovalent complexes are packaged in neurosecretory granules, then migrate along axons at a rate of 1 4 mm/h until they reach the posterior pituitary where they are stored prior to release into the bloodstream by exocytosis (67). Considerable evidence suggests that posterior pituitary hormones function as neurotransmitters (68) vasopressin acts on the anterior pituitary to release adrenocorticotropic hormone [9002-60-2] (ACTH) (69) as well as on traditional target tissues such as kidneys. Both hormones promote other important central nervous system (CNS) effects (9,70). 

Himdin [8001-27-2] is a polypeptide of 66 amino acids found ia the saUvary gland secretions of the leech Himdo medicinalis (45). It is a potent inhibitor of thrombin and biads to y-thrombia with a dissociation constant of 0.8 x 10 ° M to 2.0 x lO " M. Himdin forms a stable noncovalent complex with free and bound thrombin completely iadependent of AT-III. This material has now been cloned and expressed ia yeast cells (46,47). Its antigenic poteatial ia humans remains to be estabUshed. 

Up to this point, we have emphasized the stereochemical properties of molecules as objects, without concern for processes which affect the molecular shape. The term dynamic stereochemistry applies to die topology of processes which effect a structural change. The cases that are most important in organic chemistry are chemical reactions, conformational changes, and noncovalent complex formation. In order to understand the stereochemical aspects of a dynamic process, it is essential not only that the stereochemical relationship between starting and product states be established, but also that the spatial features of proposed intermediates and transition states must account for the observed stereochemical transformations. 

There are obviously many reactions that are too fast to investigate by ordinary mixing techniques. Some important examples are proton transfers, enzymatic reactions, and noncovalent complex formation. Prior to the second half of the 20th century, these reactions were referred to as instantaneous because their kinetics could not be studied. It is now possible to measure the rates of such reactions. In Section 4.1 we will find that the fastest reactions have half-lives of the order 10 s, so the fast reaction regime encompasses a much wider range of rates than does the conventional study of kinetics. 

Chromatin is a noncovalent complex consisting of DNA and dedicated packing proteins, the histones. The name chromatin is derived from the Greek word chroma... 

Suitable for fragile compounds (noncovalent complexes and thermally labile species)... 

S. A. Hofstadler and K. A. Sannes-Lowery. Applications of ESI-MS in Drug Discovery Interrogation of Noncovalent Complexes. Nat. Rev. Drug Discov., 5(2006) 585-595. 

Recent progress in novel micellar structures, including micelles containing exotic blocks such as natural or synthetic polypeptides and metal-containing segments, micelles from ABC triblock copolymers, Janus micelles and other noncentrosymmetric micelles, micelles based on interpolyelectrolyte or other noncovalent complexes, and metallosupramolecular micelles, will be discussed in Sect. 7. 

Stimulus-reponsive micelles have been intensively investigated during the last 5 years, and further developments could be expected. These micellar systems have been essentially prepared from double-hydrophilic block copolymers and from micelles with noncovalent complexes in the core. The interest related to these micellar systems stems from their potential applications, as briefly discussed in Sect. 4.3. 

The rate constants for micelle-catalyzed reactions, when plotted against surfactant concentration, yield approximately sigmoid-shaped curves. The kinetic model commonly used quantitatively to describe the relationship of rate constant to surfactant, D, concentration assumes that micelles, D , form a noncovalent complex (4a) with substrate, S, before catalysis may take place (Menger and Portnoy, 1967 Cordes and Dunlap, 1969). An alternative model... 

A Chapter of this volume is devoted to these techniques, which are merely illustrated in this section by one particular example. The electron transfer system that is the most intensively submitted to genetic manipulations is certainly the physiological complex between yeast cytochrome c and peroxide-oxidized cytochrome c peroxidase, which presents many advantages [143], Among the modifications performed on cytochrome c peroxidase, one may mention the substitution of Trp 191 which interacts directly with His 175 of the heme [144], and of His 181 [145] which was proposed as a bridging unit in a superexchange path involving Phe 87 of cytochrome c [136,146]. On the cytochrome c side, Phe 87 las been substituted [147], as well as other residues expected to play an important role in the stabilization of the noncovalent complex [143]. 

For the cytochrome c-plastocyanin complex, the kinetic effects of cross-linking are much more drastic while the rate of the intracomplex transfer is equal to 1000 s in the noncovalent complex where the iron-to-copper distance is expected to be about 18 A, it is estimated to be lower than 0.2 s in the corresponding covalent complex [155]. This result is all the more remarkable in that the spectroscopic and thermodynamic properties of the two redox centers appear weakly affected by the cross-linking process, and suggests that an essential segment of the electron transfer path has been lost in the covalent complex. Another system in which such conformational effects could be studied is the physiological complex between tetraheme cytochrome and ferredoxin I from Desulfovibrio desulfuricans Norway the spectral and redox properties of the hemes and of the iron-sulfur cluster are found essentially identical in the covalent and noncovalent complexes and an intracomplex transfer, whose rate has not yet been measured, takes place in the covalent species [156]. 

Hardouin, J., Lange, C. M. Biological noncovalent complexes by mass spectrometry. Curr Org Chem 2005, 9, 317-324. 

Jorgensen, T. J. D., Hvelplund, P., Andersen, J. U., Roepstorff, P. Tandem mass spectrometry of specific vs. nonspecific noncovalent complexes of vancomycin antibiotics and peptide ligands. Int J Mass Spectrom 2002, 219, 659-670. Tahallah, N., Pinkse, M., Maier, C. S., Heck, A. J. The effect of the source pressure on the abundance of ions of noncovalent protein assemblies in an electrospray ionization orthogonal time-of-fiight instrument. Rapid... 

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