Metabolic pathways regulatory enzymes

If the kinetics of the reaction disobey the Michaelis-Menten equation, the violation is revealed by a departure from linearity in these straight-line graphs. We shall see in the next chapter that such deviations from linearity are characteristic of the kinetics of regulatory enzymes known as allosteric enzymes. Such regulatory enzymes are very important in the overall control of metabolic pathways. 

The metabolic control is exercised on certain key regulatory enzymes of a pathway called allosteric enzymes. These are enzymes whose catalytic activity is modulated through non-covalent binding of a specific metabolite at a site on the protein other than the catalytic site. Such enzymes may be allosterically inhibited by ATP or allosterically activated by ATP (some by ADP and/or AMP). 

In die metabolic pathway to an amino add several steps are involved. Each step is die result of an enzymatic activity. The key enzymatic activity (usually die first enzyme in the synthesis) is regulated by one of its products (usually die end product, eg die amino add). If die concentration of die amino add is too high die enzymatic activity is decreased by interaction of die inhibitor with the regulatory site of die enzyme (allosteric enzyme). This phenomenon is called feedback inhibition. 

Such a pathway has both flow and direction. The enzymes catalyzing nonequilibrium reactions are usually present in low concentrations and are subject to a variety of regulatory mechanisms. However, many of the reactions in metabolic pathways cannot be classified as equilibrium or nonequilibrium but fall somewhere between the two extremes. 

Fig. 1. The generalized protein-protein interaction network that includes (A) direct protein-protein interactions such as in the signal transduction pathway, (B) enzyme-enzyme relations in the metabolic pathway, and (C) transcription factor-expressed gene product relations in the gene regulatory pathway. The interactions in (B) and (C) are termed indirect protein-protein interactions.

Enzymes are biological catalysts—i. e substances of biological origin that accelerate chemical reactions (see p. 24). The orderly course of metabolic processes is only possible because each cell is equipped with its own genetically determined set of enzymes. It is only this that allows coordinated sequences of reactions (metabolic pathways see p. 112). Enzymes are also involved in many regulatory mechanisms that allow the metabolism to adapt to changing conditions (see p.ll4). Almost all enzymes are proteins. However, there are also catalytically active ribonucleic acids, the ribozymes" (see pp. 246, 252). 

Metabolite flow along a metabolic pathway is mainly determined by the activities of the enzymes involved (see p. 88). To regulate the pathway, it is suf cient to change the activity of the enzyme that catalyzes the slowest step in the reaction chain. Most metabolic pathways have key enzymes of this type on which the regulatory mechanisms operate. The activity of key enzymes is regulated at three independent levels ... 

Most of the enzymes in each metabolic pathway follow the kinetic patterns we have already described. Each pathway however, includes one or more enzymes that have a greater effect on the rate of the overall sequence. These regulatory enzymes exhibit increased or decreased catalytic activity in response to certain signals. Adjustments in the rate of reactions catalyzed by regulatory enzymes, and therefore in the rate of entire metabolic sequences, allow the cell to meet changing needs for energy and for biomolecules required in growth and repair. 

The reaction involves biotin as a carrier of activated HCO3 (Fig. 14-18). The reaction mechanism is shown in Figure 16-16. Pyruvate carboxylase is the first regulatory enzyme in the gluconeogenic pathway, requiring acetyl-CoA as a positive effector. (Acetyl-CoA is produced by fatty acid oxidation (Chapter 17), and its accumulation signals the availability of fatty acids as fuel.) As we shall see in Chapter 16 (see Fig. 16-15), the pyruvate carboxylase reaction can replenish intermediates in another central metabolic pathway, the citric acid cycle. 

The flow of intermediates through metabolic pathways is controlled by 1bir mechanisms 1) the availability of substrates 2) allosteric activation and inhibition of enzymes 3) covalent modification of enzymes and 4) induction-repression of enzyme synthesis. This scheme may at first seem unnecessarily redundant however, each mechanism operates on a different timescale (Figure 24.1), and allows the body to adapt to a wde variety of physiologic situations. In the fed state, these regulatory mechanisms ensure that available nutrients are captured as glycogen, triacylglycerol, and protein. 

The concept of control of metabolic activity by allosteric enzymes or the control of enzyme activity by ligand-induced conformational changes arose from the study of metabolic pathways and their regulatory enzymes. A good example is the multi-enzymatic sequence catalysing the conversion of L-threonine to L-isoleucine shown in Fig. 5.32. 

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