Mass spectrometry molecular structure

Legionella pneumophila produces a siderophore named legiobactin, which shows no catecholate or hydroxamate reactions (206). Enzymatic studies suggest a citrate structure in agreement with the data obtained by mass spectrometry (molecular mass ca. 350 Da) and NMR (three carbonyl and ten aliphatic C atoms). It is not clear yet as to whether legiobactin is essential for the iron acquisition in the aqueous habitat of the bacterium or during lung infection (2, 65). 

The remaining four diketopiperazines, 4-7, were identified in the same manner molecular formulae by mass spectrometry and structural details from IR, mass spectral fragmentations and H-NMR decoupling experiments. 

The isolated degradant was analyzed by NMR and mass spectrometry for structural identity. Based on LC/MS data collected, the isolated degradant was confirmed to have an addition of 14 Da to the molecular weight of the drug substance, indicative of a ketone moiety. NMR analysis confirmed that the M+14 degradant contained a carbonyl group at the benzylic site shown. 

These steps, ionisation and dissociations, must be carried out in vacuum so as to avoid collisions between the ions of interest and other substances (e.g. neutrals and radicals). Taken together, such a series of unimolecular dissociations are termed fragmentation patterns. They are characteristic of the structural features of the original molecular ion radical, hence the extensive applications of mass spectrometry to structure elucidation problems. 

Inorganic Chemistry of the Main-Group Elements IrKMganic Chemistry of the Transition Elements Inorganic Reaction Mechanisms Macromolacular Chemistry Mass Spectrometry Molecular Spectroscopy Molecular Structure by Diffraction Methods. 4 Nuclear Magnetic Resonance... 

Mass spectrometry Identification, structural information, molecular weight information, and quantification information is dependent on the mode of ionization particularly useful when combined with a chromatographic separation technique, such as in GC-MS, HPLC-MS, and pyrolysis GC-MS 651,652, 656,657, 657-662... 

According to early theoretical calculations Kloptnan and I carried out in 1971, the parent molecular ions of alkanes, such as CH4, observed in mass spectrometry, also prefer a planar hypercarbon structure. 

Ultraviolet visible (UV VIS) spectroscopy, which probes the electron distribution especially m molecules that have conjugated n electron systems Mass spectrometry (MS), which gives the molecular weight and formula both of the molecule itself and various structural units within it... 

As we have just seen interpreting the fragmentation patterns m a mass spectrum m terms of a molecule s structural units makes mass spectrometry much more than just a tool for determining molecular weights Nevertheless even the molecular weight can provide more information than you might think... 

Metastable ions yield valuable information on fragmentation in mass spectrometry, providing insight into molecular structure. In electron ionization, metastable ions appear naturally along with the much more abundant normal ions. Abundances of metastable ions can be enhanced by collisionally induced decomposition. 

The previous discussion has centered on how to obtain as much molecular mass and chemical structure information as possible from a given sample. However, there are many uses of mass spectrometry where precise isotope ratios are needed and total molecular mass information is unimportant. For accurate measurement of isotope ratio, the sample can be vaporized and then directed into a plasma torch. The sample can be a gas or a solution that is vaporized to form an aerosol, or it can be a solid that is vaporized to an aerosol by laser ablation. Whatever method is used to vaporize the sample, it is then swept into the flame of a plasma torch. Operating at temperatures of about 5000 K and containing large numbers of gas ions and electrons, the plasma completely fragments all substances into ionized atoms within a few milliseconds. The ionized atoms are then passed into a mass analyzer for measurement of their atomic mass and abundance of isotopes. Even intractable substances such as glass, ceramics, rock, and bone can be examined directly by this technique. 

The techniques described thus far cope well with samples up to 10 kDa. Molecular mass determinations on peptides can be used to identify modifications occurring after the protein has been assembled according to its DNA code (post-translation), to map a protein structure, or simply to confirm the composition of a peptide. For samples with molecular masses in excess of 10 kDa, the sensitivity of FAB is quite low, and such analyses are far from routine. Two new developments have extended the scope of mass spectrometry even further to the analysis of peptides and proteins of high mass. 

Tandem mass spectrometry (MS/MS) produces precise structural or sequence information by selective and specific induced fragmentation on samples up to several thousand Daltons. For samples of greater molecular mass than this, an enzyme digest will usually produce several peptides of molecular mass suitable for sequencing by mass spectrometry. The smaller sequences can be used to deduce the sequence of the whole protein. 

A compound with the molecular formula C7///JNO3, determined by mass spectrometry, was isolated from the plant Petiveria alliacea (Phytolaccaceae). What is its structure given the set of NMR results 52 ... 

Amongst products isolated from Heliotropium spathulatum (Boraginaceae) were 9 mg of a new alkaloid which gave a positive Ehrlich reaction with p-dimethylaminobenzaldehyde The molecular formula determined by mass spectrometry is CisH2sNOs. What is the structure of the alkaloid given the set of NMR results 54 Reference is useful in providing the solution to this problem. Conditions CDCI3, 9 mg per 0.3 ml, 25 °C, 400 MHz ( //), 100 MHz ( C). (a) HH COSY plot ... 

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