Mass analyte spectra

FJciureJyT. (a) Mass spectrum at the top of the chromatographic peak (b) background spectrum (c) analyte spectrum after background subtraction (d) library spectrum of hexachlorobiphenyl (score 99%). 

For the mass spectrometric detection, the requirement for GC-MS with El methods is that, using a ratio to the base peak in the analyte spectrum, peaks with a... 

Indium is often used as an internal standard element for semiquantitative analysis, because it is usually present at low concentration (or totally absent) in most types of samples it can be obtained at modest cost in a highly purified form it has two isotopes available for measurement at significantly different abundances (4.3% for m/z 113 and 95.7% for m/z 115) that are relatively interference free in most sample matrices and these isotopes fall in the middle of the mass spectrum, so they can be used for both low and high mass analyte elements. Typical semiquantitative analyses, using both calibration methods, are illustrated in Table 7.1. Other elements can also be used for internal standards. Internal standardization is described in more detail in the following section. 

The amino add analysis of all peptide chains on the resins indicated a ratio of Pro Val 6.6 6.0 (calcd. 6 6). The peptides were then cleaved from the resin with 30% HBr in acetic acid and chromatogra phed on sephadex LH-20 in 0.001 M HCl. 335 mg dodecapeptide was isolated. Hydrolysis followed by quantitative amino acid analysis gave a ratio of Pro Val - 6.0 5.6 (calcd. 6 6). Cycll2ation in DMF with Woodward s reagent K (see scheme below) yielded after purification 138 mg of needles of the desired cyc-lododecapeptide with one equiv of acetic add. The compound yielded a yellow adduct with potassium picrate, and here an analytically more acceptable ratio Pro Val of 1.03 1.00 (calcd. 1 1) was found. The mass spectrum contained a molecular ion peak. No other spectral measurements (lack of ORD, NMR) have been reported. For a thirty-six step synthesis in which each step may cause side-reaaions the characterization of the final product should, of course, be more elaborate. 

Schematic diagram of an orthogonal Q/TOF instrument. In this example, an ion beam is produced by electrospray ionization. The solution can be an effluent from a liquid chromatography column or simply a solution of an analyte. The sampling cone and the skimmer help to separate analyte ions from solvent, The RF hexapoles cannot separate ions according to m/z values and are instead used to help confine the ions into a narrow beam. The quadrupole can be made to operate in two modes. In one (wide band-pass mode), all of the ion beam passes through. In the other (narrow band-pass mode), only ions selected according to m/z value are allowed through. In narrow band-pass mode, the gas pressure in the middle hexapole is increased so that ions selected in the quadrupole are caused to fragment following collisions with gas molecules. In both modes, the TOF analyzer is used to produce the final mass spectrum.

Once a mass spectrum from an eluting component has been acquired, the next step is to try to identify the component either through the skill of the mass spectroscopist or by resorting to a library search. Most modem GC/MS systems with an attached data station include a large library of spectra from known compounds (e.g., the NIST library). There may be as many as 50,000 to 60,000 stored spectra covering most of the known simple volatile compounds likely to be met in analytical work. Using special search routines under the control of the computer, one can examine... 

Most mass spectrometers for analytical work have access to a large library of mass spectra of known compounds. These libraries are in a form that can be read immediately by a computer viz., the data corresponding to each spectrum have been compressed into digital form and stored permanently in memory. Each spectrum is stored as a list of m/z values for all peaks that are at least 5% of the height of the largest peak. To speed the search process, a much shorter version of the spectrum is normally examined (e.g., only one peak in every fourteen mass units). 

Isotopes of an element are formed by the protons in its nucleus combining with various numbers of neutrons. Most natural isotopes are not radioactive, and the approximate pattern of peaks they give in a mass spectrum can be used to identify the presence of many elements. The ratio of abundances of isotopes for any one element, when measured accurately, can be used for a variety of analytical purposes, such as dating geological samples or gaining insights into chemical reaction mechanisms. 

The optimal analytical GDMS instrument for bulk trace element analysis is the one providing the largest analytical signal with the lowest background signal, the fewest problems with isobaric interferences in the mass spectrum (e.g., the interference of with Fe ), and the least contamination from instrument com-... 

In gas chromatography/mass spectrometry (GC/MS), the effluent from a gas chromatograph is passed into a mass spectrometer and a mass spectrum is taken every few milliseconds. Thus gas chromatography is used to separate a mixture, and mass spectrometry used to analyze it. GC/MS is a very powerful analytical technique. One of its more visible applications involves the testing of athletes for steroids, stimulants, and other performance-enhancing drugs. These drugs are converted in the body to derivatives called metabolites, which are then excreted in the... 

The power of mass spectrometry lies in the fact that the mass spectra of many compounds are sufficiently specific to allow their identification with a high degree of confidence, if not with complete certainty. If the analyte of interest is encountered as part of a mixture, however, the mass spectrum obtained will contain ions from all of the compounds present and, particularly if the analyte of interest is a minor component of that mixture, identification with any degree of certainty is made much more difficult, if not impossible. The combination of the separation capability of chromatography to allow pure compounds to be introduced into the mass spectrometer with the identification capability of the mass spectrometer is clearly therefore advantageous, particularly as many compounds with similar or identical retention characteristics have quite different mass spectra and can therefore be differentiated. This extra specificity allows quantitation to be carried out which, with chromatography alone, would not be possible. 

The great advantage of the mass spectrometer is its abihty to use mass, more accurately the mass-to-charge ratio, as a discriminating feature. In contrast to, for example, the UV detector, which gives rise to broad signals with little selectivity, the ions in the mass spectrum of a particular analyte are often characteristic of that analyte. Under these conditions, discrete signals, which may be measured accurately and precisely, may be obtained from each analyte when they are only partially resolved or even completely umesolved from the other compounds present. 

A more definitive identification may be obtained by combining retention characteristics with more specific information from an appropriate detector. Arguably, the most information-rich HPLC detectors for the general identification problem are the diode-array UV detector, which allows a complete UV spectrum of an analyte to be obtained as it elutes from a column, and the mass spectrometer. The UV spectrum often allows the class of componnd to be determined but the... 

The most widely used LC detector, and the one which, other than the mass spectrometer, gives the most insight into the identity of an analyte, is probably the UV detector, although a UV spectrum very rarely allows an unequivocal identification to be made. It may allow the class of compound to be identified and this, together with the retention characteristics of the analyte, can provide the analyst with a better indication of the identity of the analyte. In the vast majority of cases, however, identification with complete certainty cannot be achieved. 

Another advantage of mass spectrometry is its sensitivity - a full-scan spectrum, and potentially an identification, can be obtained from picogram (pg) amounts of analyte. In addition, it may be used to provide quantitative information, usually to low levels, with high accuracy and precision. 

One of the major limitations of FI is that the excess energy imparted to the analyte molecule during electron bombardment may bring about such rapid fragmentation that the molecular ion is not observed in the mass spectrum. Under... 

These arise either by an analogous process to that described above for Cl, i.e. the adduction of a negatively charged species such as Cl , and the abstraction of a proton to generate an (M — H) ion, or by electron attachment to generate an M ion. The ions observed in the mass spectrum are dependent on the species generated by the reagent gas and the relative reactivities of these with each other and with the analyte molecule. 

A mass spectrum may be considered to be a plot of the number of ions of each m/z ratio produced by an analyte upon ionization. Having produced the ions by... 

For identification purposes, a mass spectrum covering all of the m/z ratios likely to be generated by the analyte is required. 

Very rarely, however, will a single mass spectrum provide us with complete analytical information for a sample, particularly if mass spectral data from a chromatographic separation, taking perhaps up to an hour, is being acquired. The mass spectrometer is therefore set up to scan, repetitively, over a selected m jz range for an appropriate period of time. At the end of each scan, the mass spectrum obtained is stored for subsequent manipulation before a further spectrum is acquired. 

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