Ligand assessment

Stockmann, T.J. and Ding, Z.R (2011) Uranyl ion extraction with conventional PUREX/TRUEX ligands assessed by electroanalytical chemistry at micro hquid/liquid interfaces. Analytical Chemistry, 83 (19), 7542-7549. 

Practical Examples of the Use of Fragment Screening for Ligandability Assessment... 

An understanding of a wide variety of phenomena concerning conformational stabilities and molecule-molecule association (protein-protein, protein-ligand, and protein-nucleic acid) requires consideration of solvation effects. In particular, a quantitative assessment of the relative contribution of hydrophobic and electrostatic interactions in macromolecular recognition is a problem of central importance in biology. 

A critical assessment of the chemical thermodynamic properties of the actinides and their compounds is presently being prepared by an international team of scientists under the auspices of the International Atomic Energy Agency (Vienna). As a result of this effort, four publications (1, 2, 3, 5) have already become available and a further ten 6-T4), including the halides (8) and aqueous complexes with Tnorganic ligands (12),... 

The thermodynamic stability of coordination compounds is relatively easy to determine, and provides us with a valuable pool of data from which we may assess the importance of ligand-field and other effects upon the overall properties of transition-metal compounds. The bulk of this chapter will be concerned with the thermodynamic stability of transition-metal compounds, but we will briefly consider kinetic factors at the close. 

There is also an entropy term associated with the desolvation of the ligands. This is much more difficult to assess, and may make for either favourable or unfavourable contributions to the overall entropy changes. 

The complex contains 72 atoms with 244 valence electrons distributed in 226 valence atomic orbitals. In order to reduce the computational effort, and to assess the contribution of the ligand 7r-orbitals to the overall spectrum, we examined a "reduced" model, see Figure 2, in which the benzene rings of the ligands are replaced by -HC=CH- groups. This model compound consists of... 

The yeast reporter gene assays not only assess for the interaction of the chemical with the hormone receptor, but also the ability of that receptor-chemical ligand interaction to activate the hormone DNA response element. It should be realized, however, that most of these systems have been developed with human and mammalian hormone receptors and differences in ligand potencies can occur between different animal species. A comprehensive review of in vitro assays for measuring estrogenic activity, and some of the issues of comparability, is provided by Zacharewski (1997). 

Virtual screening uses computational docking methods to assess which of a large database of compounds will fit into the unliganded structure of the target protein. Current protocols and methods can, with up to 80% success, predict the binding position and orientation of ligands that are known to bind... 

Ferrara P, Gohlke H, Price DJ, Klebe G, Brooks CL. Assessing scoring functions for protein-ligand interactions. J Med Chem 2004 47 3032-47. 

The constant s, characteristic of the substrate complex, reflects its sensitivity to variation in nucleophilicity as assessed by the Ptpy2Cl2 reaction. It is called the nucleophilic discrimination factor (ndf). The intercept log k turns out to be related to the value of the k term in the rate law for the solvent in question. Some representative ligands involved in attack on Pt(II) complexes may be listed in order of decreasing as follows ... 

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