Conformational stability

Calculations show that the deviation from planarity leads to greater conformational stability for the phenylthiazoles (143, 145). In particular, the potential energy minimum is achieved at a twist angle of about 30° for 4-phenylthiazole, 40° for 2-phenylthiazole, and 45° for 5-phenylthiazole. 

An understanding of a wide variety of phenomena concerning conformational stabilities and molecule-molecule association (protein-protein, protein-ligand, and protein-nucleic acid) requires consideration of solvation effects. In particular, a quantitative assessment of the relative contribution of hydrophobic and electrostatic interactions in macromolecular recognition is a problem of central importance in biology. 

Temperature can also be used to optimize enantioselectivity in SFC. The selectivity of most CSPs increases as temperature decreases. For this reason, most chiral separations in SFC are performed at ambient or subambient temperatures [50, 74]. Subambient temperatures are particularly useful for compounds having low conformational stability [75]. Stringham and Blackwell explored the concept of entropically driven separations [76]. As temperature increased, enantioselectivity decreased until the enantiomers co-eluted at the isoelution temperature. Further increases in temperature resulted in reversal of elution order of the enantiomers. The temperature limitations of the CSP should be considered before working at elevated temperatures. 

Roth, A. F., and Ward, W. W. (1983). Conformational stability after protease treatment in Aequorea GFP. Photochem. Photobiol. 37S S71. 

The substitution of a heteroatom for an a-sulfoxy methylene group substantially increases the preference for an axial orientation of the sulfoxide oxygen320, despite the smaller space requirement of the sulfur with its lone pairs, compared to that of a methylene group321, at least in the case of 1,3-dithiolane oxides. The substituting heteroatom, therefore, should decrease the conformation stability (i.e. lower the barrier to chair-chair interconversion). 

Table 11 summarizes the relative conformation stabilities of various sulfmyl carbanions, based on the H/D exchange rates of the corresponding sulfmyl compounds 36-39. The results are in good agreement with the order of stabilities obtained from the MO calculations using the 3-21G basis set. This is remarkable, since the calculation did not take into consideration the solvent effect, despite the strong unsymmetrical solvation on the a-sulfmyl carbanion. 

In 1982 the present author discovered cyclic orbital interactions in acyclic conjugation, and showed that the orbital phase continuity controls acyclic systems as well as the cyclic systems [23]. The orbital phase theory has thus far expanded and is still expanding the scope of its applications. Among some typical examples are included relative stabilities of cross vs linear polyenes and conjugated diradicals in the singlet and triplet states, spin preference of diradicals, regioselectivities, conformational stabilities, acute coordination angle in metal complexes, and so on. 

The orbital phase theory was applied to the conformations of alkenes (a- and P-substituted enamines and vinyl ethers) [31] and alkynes [32], The conformational stabilities of acetylenic molecules are described here. 

Marlborough, D.I., Miller, D.S. Cammack, K.A. (1975). Comparative study on conformational stability and sub-unit interactions of two bacterial asparaginases. Biochimica Biophysica Acta, 386, 576-89. 

While loops lack apparent stmcmral regularity, they exist in a specific conformation stabilized through hydrogen bonding, salt bridges, and hydrophobic interactions with other portions of the protein. However, not all portions of proteins are necessarily ordered. Proteins may contain disordered regions, often at the extreme amino or carboxyl terminal, characterized by high conformational flexibility. In many instances, these disor-... 

We note that the calculation of At/ will depend primarily on local information about solute-solvent interactions i.c., the magnitude of A U is of molecular order. An accurate determination of this partition function is therefore possible based on the molecular details of the solution in the vicinity of the solute. The success of the test-particle method can be attributed to this property. A second feature of these relations, apparent in Eq. (4), is the evaluation of solute conformational stability in solution by separately calculating the equilibrium distribution of solute conformations for an isolated molecule and the solvent response to this distribution. This evaluation will likewise depend on primarily local interactions between the solute and solvent. For macromolecular solutes, simple physical approximations involving only partially hydrated solutes might be sufficient. 

Chiral bis-(binaphthophosphole) (bis(BNP)) ligands have been used in the asymmetric hydroformylation of styrene. In solution, the free diphospholes display fluxional behavior. Consistent with their structure, the reaction of the bis(BNP) compounds with platinum(II) derivatives gives either cis chelate mononuclear complexes or trans phosphorus-bridged polynuclear derivatives. Coordination to platinum enhances the conformational stability of bis(BNP)s and diastereomeric complexes can be detected in solution. In the presence of SnCl2, the platinum complexes give rise to catalysts that exhibit remarkable activity in the hydroformylation of styrene. Under optimum conditions, reaction takes place with high branched selectivity (80-85%) and moderate enantio-selectivity (up to 45% ee). 

Klink TA, Woycechowsky KJ, Taylor KM, et al. Contribution of disulfide bonds to the conformational stability and catalytic activity of ribonuclease A. Eur. J. Biochem. 2000 267 566-572. 

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