Saturation kinetics, Michaelis Menten

Several reports have shown that the kinetics of P-gp transport activity can be sufficiently described by one-site Michaelis-Menten saturable kinetics (199-206). Where JP.g ) is the flux mediated by P-gp transport activity,, /max is the maximal flux mediated by P-gp transport activity, Km is the Michaelis-Menten constant, and Ct is the concentration of substrate present at the target (binding) site of P-gp. When donor concentration is used in place of Ct, apparent Km and Jmax values are obtained. Binding affinity of the substrate to P-gp and the catalytic (ATPase) activity of P-gp combine to determine Km, and, /max is determined by the catalytic (ATPase) activity of P-gp and the expression of P-gp in the system (concentration of P-gp protein). It has recently been noted that since substrates must first partition or cross the membrane to access the binding site, accurate assessing of P-gp kinetics can be difficult (207). Furthermore, the requirement of first partitioning into the membrane has been shown to produce asymmetric apparent kinetics in polarized cells where AP and BL membrane compositions may be sufficiently different (206). 

In the kinetic considerations discussed above, a plot of 1 /V0 vs 1/[S0] yields a straight line, and the enzyme exhibits Michaelis-Menten (hyperbolic or saturation) kinetics. It is implicit in this result that all the enzyme-binding sites have the same affinity for the substrate and operate independently of each other. However, many enzymes exist as oligomers containing subunits or domains that function in the regulation of the catalytic site. Such enzymes do not exhibit classic Michaelis-Menten saturation kinetics. 

Can a phosphorylation-dephosphorylation switch be more sensitive to the level of kinase concentration than n = 1 as given in Equation 5.12 We note that the kinetic scheme in Equation (4.7) is obtained under the assumption of no Michaelis-Menten saturation. Since this assumption may not be realistic, let us move on to study the enzyme kinetics in Figure (5.2) in terms of saturable Michaelis-Menten kinetics. The mechanism by which saturating kinetics of the kinase and phosphatase leads to sensitive switch-like behavior is illustrated in Figure 5.4. The reaction fluxes as a function of / (the ratio [S ]/Sc) for two cases are plotted. The first case (switch off)... 

Figure 8.3. Rate as function of reactant concentration in reaction with Michaelis-Menten saturation kinetics (schematic).

Michaelis-Menten saturation kinetics should occur only at low substrate concentrations, near 10 M. Using a spectrophotometric assay it is possible to observe statistically significant deviations as shown by the Line-weaver-Burke and Eadie plots in Figure 14 using DOPA as the substrate in the catecholase reaction. 

With respect to benzaldehyde, (R)-oxynitrilase exhibits saturation kinetics (Michaelis Menten kinetics, see Sect. 7.4.2.1) and a maximum reaction rate is reached above a concentration of about 5 mmol L 1. The chemical reaction presents a linear increase of the reaction rate with increasing benzaldehyde concentration, representing first order kinetics, when the concentration of HCN is kept constant (see Fig. 7-13). As a consequence the enzymatic reaction becomes more dominating at lower concentrations of the substrate benzaldehyde (for HCN as substrate the same kinetic behavior occurs, data not shown). Accordingly an enzyme reactor would be suitable that works under minimum average substrate concentrations. These requirements are satisfied by the continuous stirred tank reactor (CSTR). In Sect. 7.5.2.1 this aspect of enzyme reaction engineering will be discussed further. 

Saturation kinetics are also called zero-order kinetics or Michaelis-Menten kinetics. The Michaelis-Menten equation is mainly used to characterize the interactions of enzymes and substrates, but it is also widely applied to characterize the elimination of chemical compounds from the body. The substrate concentration that produces half-maximal velocity of an enzymatic reaction, termed value or Michaelis constant, can be determined experimentally by graphing r/, as a function of substrate concentration, [S]. 

Log-concave kinetics can be due to saturable Michaelis-Menten elimination depending on the maximal metabolism capacity (Umax) and the Michaelis constant (Km). 

A special case for reduced bioavailabilty results from first-pass extraction that sometimes might be subjected to saturable Michaelis-Menten absorption kinetics. The lower the hepatic drug clearance is (Clhep) in relation to liver blood flow (Ql), or the faster the drug absorption rate constant (Ka), and the higher the dose (D) are, the more bioavailable is the drug (F). 

An additional problem arises when the exchange processes are rate-limited. This may be caused by enzymes that become saturated when all their active sites are occupied by the drug, or it may be due to adsorbing proteins that have a limited binding capacity. In such cases, one obtains a type of Michaelis-Menten kinetics of the form ... 

Let us consider the determination of two parameters, the maximum reaction rate (rITOIX) and the saturation constant (Km) in an enzyme-catalyzed reaction following Michaelis-Menten kinetics. The Michaelis-Menten kinetic rate equation relates the reaction rate (r) to the substrate concentrations (S) by... 

A kinetic model describing the HRP-catalyzed oxidation of PCP by H202 should account for the effects of the concentrations of HRP, PCP, and H202 on the reaction rate. To derive such an equation, a reaction mechanism involving saturation kinetics is proposed. Based on the reaction scheme described in Section 17.3.1, which implies that the catalytic cycle is irreversible, the three distinct reactions steps (Equations 17.2 to 17.4) are modified to include the formation of Michaelis-Menten complexes ... 

The question arises as to whether comparisons with protein enzymes are justified. In other words, what can ribozymes really do An important parameter for measuring the efficiency of enzymes is the value of kc-JK. This quotient is derived from the values of two important kinetic parameters kc-Al is a rate constant, also called turnover number, and measures the number of substrate molecules which are converted by one enzyme molecule per unit time (at substrate saturation of the enzyme). Km is the Michaelis-Menten constant it corresponds to the substrate concentration at which the rate of reaction is half its maximum. 

Mathematically, the Michaelis-Menten equation is the equation of a rectangular hyperbola. Sometimes you ll here reference to hyperbolic kinetics, this means it follows the Michaelis-Menten equation. A number of other names also imply that a particular enzyme obeys the Michaelis-Menten equation Michaelis-Menten behavior, saturation kinetics, and hyperbolic kinetics. 

Zn2+-catalyzed cleavage of (Zn2+ HPNPP)2 in ethanol discussed above.85 For the slower reacting MNPP, the chemical cleavage step (represented by k3 and requiring a methoxide which is probably coordinated to one or both of the metal ions in 35 2Zn(II)) is relatively slow, so that both the pre-equilibrium steps are established and typical Michaelis-Menten behavior is observed with saturation at higher [35 2Zn(II)]. On the other hand, with the far more reactive HPNPP the chemical cyclization step, /c3, is proposed to be faster than the k 2 step in the concentration range of 35 2Zn(II) used here. In this event, the observed kinetics would be linear in [35 2Zn(II)] as is the case in Fig. 20, with kohs — /c, [35 2Zn(I )]k2/(k, + k2). 

As discussed in Section 5.1, for saturable uptake of a trace metal, the steady-state process is most commonly described by Michaelis-Menten uptake kinetics [265] ... 

The kinetic behavior of drugs in the body can generally be accounted for by first-order kinetics that are saturable, i.e., Michaelis-Menten kinetics. A brief review of the principles of Michaelis-Menten kinetics is given next (4). 

Similar to Eq. (67), the first reaction (incorporating the enzyme phosphofructo-kinase) exhibits a Hill-type inhibition by its substrate ATP [126]. The overall ATP utilization v3 (ATP) is modeled by a saturable Michaelis Menten function. The system is specified by five kinetic parameters (with Gx lumped into Vm ), the Hill coefficient n, and the total concentration, 4 / = [ATP] + [ADP]. Note that the model is not intended to capture biological realism, rather it serves as a paradigmatic example to identify dynamic behavior in metabolic pathways. 

The overall influence of ATP on the rate V (ATP) is measured by a saturation parameter C (—oo, 1]. Note that, when using Eq. (139) as an explicit rate equation, the saturation parameter implicitly specifies a minimal Hill coefficient min > C necessary to allow for the reverse transformation of the parameters. The interval 6 [0,1] corresponds to conventional Michaelis Menten kinetics. For = 0, ATP has no net influence on the reactions, either due to complete saturation of a Michaelis Menten term or, equivalently, due to an exact compensation of the activation by ATP as a substrate by its simultaneous effect as an inhibitor. For < 0, the inhibition by ATP supersedes the activation of the reaction by its substrate ATP. 

The parameterization of the remaining reactions is less complicated. For simplicity, the rate v2(TP,ADP) is assumed to follow mass-action kinetics, giving rise to saturation parameters equal to one. Finally, the ATPase represents the overall ATP consumption within the cell and is modeled with a simple Michaelis Menten equation, corresponding to a saturation parameter 6 e [0,1], The saturation matrix is thus specified by four nonzero entries ... 

The dependence (1 TP of v, on ATP is modeled as in the previous section, using an interval C [—00,1] that reflects the dual role of the cofactor ATP as substrate and as inhibitor of the reaction. All other reactions are assumed to follow Michaelis Menten kinetics with ()rs E [0, 1], No further assumption about the detailed functional form of the rate equations is necessary. Given the stoichiometry, the metabolic state and the matrix of saturation parameter, the structural kinetic model is fully defined. An explicit implementation of the model is provided in Ref. [84],... 

For the irreversible reactions, we assume Michaelis Menten kinetics, giving rise to 15 saturation parameters O1. C [0, 1] for substrates and products, respectively. In addition, the triosephospate translocator is modeled with four saturation parameters, corresponding to the model of Petterson and Ryde-Petterson [113]. Furthermore, allosteric regulation gives rise to 10 additional parameters 7 parameters 9" e [0, — n for inhibitory interactions and 3 parameters 0" [0, n] for the activation of starch synthesis by the metabolites PGA, F6P, and FBP. We assume n = 4 as an upper bound for the Hill coefficient. 

Equation (4) corresponds to saturation-type (Michaelis-Menten) kinetics and rate constants obtained over a suitable range of [CD], sufficient to reflect the hyperbolic curvature, can be analysed to provide the limiting rate constant, kc, and the dissociation constant, Ks (VanEtten et al., 1967a Bender and Komiyama, 1978 Szejtli, 1982 Sirlin, 1984 Tee and Takasaki, 1985). The rate constant ku is normally determined directly (at zero [CD]), and sometimes Ks can be corroborated by other means (Connors, 1987). 

It has been found experimentally that in most cases v is directly proportional to the concentration of enzyme [.E0] and that v generally follows saturation kinetics with respect to the concentration of substrate [limiting value called Vmax. This is expressed quantitatively in the Michaelis-Menten equation originally proposed by Michaelis and Menten. Km can be seen as an apparent dissociation constant for the enzyme-substrate complex ES. The maximal velocity Vmax = kcat E0. ... 

In zone a of Figure 2.5, the kinetics are first order with respect to [S], that is to say that the rate is limited by the availability (concentration) of substrate so if [S] doubles the rate of reaction doubles. In zone c however, we see zero order kinetics with respect to [S], that is the increasing substrate concentration no longer has an effect as the enzyme is saturated zone b is a transition zone. In practice it is difficult to demonstrate the plateau in zone c unless very high concentrations of substrate are used in the experiment. Figure 2.5 is the basis of the Michaelis-Menten graph (Figure 2.6) from which two important kinetic parameters can be approximated ... 

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