Isoprene/isoprenoid

Aldor, I.S., Beck, Z.Q., Miller, M.C., and Peres, C.M. (2013) Production of isoprene, isoprenoid precursors, and isoprenoids using acetoacetyl-CoA synthase. US Patent 2013/0122562 Al. 

Chotani, G.K., Nielsen, A.T., and Vaviline, D.V. (2013) Methods for increasing microbial production of isoprene, isoprenoids, and isoprenoid precursor molecules using glucose and acetate co-metabolism. PCX Patent WO 2013052914 A2. 

D-Mevalonic acid is the fundamental intermediate in the biosynthesis of the terpenoids and steroids, together classed as poly-isoprenoids. The biogenetic isoprene unit is isopentenyl pyrophosphate which arises by enzymic decarboxylation-dehydration of mevalonic acid pyrophosphate. D-Mevalonic acid is almost quantitatively incorporated into cholesterol synthesized by rat liver homogenates. 

Terpenes are often referred to as isoprenoid compounds and are classified accord mg to the number of isoprene units they contain (Table 26 2)... 

Although the term terpene once referred only to hydrocarbons current usage includes functionally substituted derivatives as well grouped together under the general term isoprenoids Figure 26 6 (page 1086) presents the structural formulas for a number of representative examples The isoprene units m some of these are relatively easy to identify The three isoprene units m the sesquiterpene farnesol, for example are mdi cated as follows m color They are joined m a head to tail fashion... 

Figure 47-6. The structure of dolichol. The phosphate in dolichol phosphate is attached to the primary alcohol group at the left-hand end of the molecule. The group within the brackets is an isoprene unit (n = 17-20 isoprenoid units).

C. Nucleoside Diphosphate Sugars.—A polyprenol phosphate containing eleven isoprene units is involved in the biosynthesis of various bacterial cell-wall components.As mentioned in last year s Report, another isoprenoid phosphate, dolichol monophosphate (40), is an intermediate in sugar... 

More than half of the reported secondary metabolites from macroalgae are isoprenoids. Terpenes, steroids, carotenoids, prenylated quinines, and hydroqui-nones make up the isoprenoid class, which is understood to derive from either the classical mevalonate pathway, or the mevalonate-independent pathway (Stratmann et al. 1992). Melavonic acid (MVA) (Fig. 1.2) is the first committed metabolite of the terpene pathway. Dimethylallyl (dl meth al lal) pyrophosphate (DMAPP) (Fig. 1.3) and its isomer isopentenyl pyrophosphate (IPP, Fig. 1.3) are intermediates of the MVA pathway and exist in nearly all life forms (Humphrey and Beale 2006). Geranyl (ja ran al) (C10) and famesyl (C15) units are generated by head-to-tail (Fig. 1.3) condensation of two (for C10) or three (for C15) 5-carbon DMA-like isoprene units, identifiable in final products by the characteristic fish-tail repeating units, as traced over the structure of a sesquiterpene in Fig. 1.3 (Humphrey and Beale 2006). Additional IPP condensation with famesyl pyrophosphate (FPP)... 

Carotenoids are lipid-soluble terpenoids derived from the isoprenoid pathway and are located in hydrophobic areas of cells. All have a 40-carbon isoprene backbone with a variety of ring structures at one or both ends (Fig. 8.2) [25]. The carbon skeleton is derived from five-carbon isoprenoid groups and contains alternating conjugated double bonds. There are two kinds of carotenoids (Fig. 8.2) carotenes composed of carbon and hydrogen and xanthophylls composed of carbon, hydrogen, and oxygen. 

Formally, isoprenoids are derived from a single common building block, isoprene (2-methyl-l,3-butadiene), a methyl-branched compound with five C atoms. Activated isoprene, isopentenyl diphosphate, is used by plants and animals to biosynthesize linear and cyclic oligomers and polymers. For the isoprenoids listed here—which only represent a small selection—the number of isoprene units (1) is shown. 

Isoprene metabolism in plants is very complex. Plants can synthesize many types of aromatic substances and volatile oils from isoprenoids. Examples include menthol (1= 2 ), camphor (1 = 2), and citronellal (1 = 2). These Cio compounds are also called monoterpenes. Similarly, compounds consisting of three isoprene units (1 = 3) are termed sesquiterpenes, and the steroids (1 = 6) are called triterpenes. 

Isoprene chains are sometimes used as lipid anchors to fix molecules to membranes (see p. 214). Chlorophyll has a phytyl residue (1 = 4) as a lipid anchor. Coenzymes with isoprenoid anchors of various lengths include ubiquinone (coenzyme Q 1 = 6-10), plastoqui-none (1 = 9), and menaquinone (vitamin K 1 = 4-6). Proteins can also be anchored to membranes by isoprenylation. 

Cholesterol is one of the isoprenoids, synthesis of which starts from acetyl CoA (see p. 52). In a long and complex reaction chain, the C27 sterol is built up from C2 components. The biosynthesis of cholesterol can be divided into four sections. In the first (1), mevalonate, a Ce compound, arises from three molecules of acetyl CoA. In the second part (2), mevalonate is converted into isopen-tenyl diphosphate, the active isoprene. In the third part (3), six of these C5 molecules are linked to produce squalene, a C30 compound. Finally, squalene undergoes cycliza-tion, with three C atoms being removed, to yield cholesterol (4). The illustration only shows the most important intermediates in biosynthesis. 

The aglycone of this type of glycoside is biosynthetically derived from isoprene units. There are two major classes of isoprenoid glycosides saponins and cardiac glycosides. 

The synthesis of all isoprenoids starts with acetyl-CoA, which in a series of six different enzyme reactions is converted into isopentenyl-diphosphate (-PP), the basic C-5 isoprene unit that is used for the synthesis of all subsequent isoprenoids (Fig. 5.1.1). At the level of farnesyl-PP the pathway divides into several branches that are involved in the production of the various isoprenoid end products. One of the major branches involves the cholesterol biosynthetic part of the pathway, of which squalene is the first committed intermediate in the production of sterols. Following cycliza-tion of squalene, lanosterol is produced. To eventually produce cholesterol from la-... 

FIGURE 10-22 Some other biologically active isoprenoid compounds or derivatives. Isoprene structural units are set off by dashed red lines. In most mammalian tissues, ubiquinone (also called coen-... 

To establish unambiguously the length of a hydrocarbon chain or the position of double bonds, mass spectral analysis of lipids or their volatile derivatives is invaluable. The chemical properties of similar lipids (for example, two fatty acids of similar length unsaturated at different positions, or two isoprenoids with different numbers of isoprene units) are very much alike, and their positions of elution from the various chromatographic procedures often do not distinguish between them. When the effluent from a chromatography column is sampled by mass spectrometry, however, the components of a lipid mixture can be simultaneously separated and identified by their unique pattern of fragmentation (Fig. 10-24). 

We begin with an account of the main steps in the biosynthesis of cholesterol from acetate, then discuss the transport of cholesterol in the blood, its uptake by cells, the normal regulation of cholesterol synthesis, and its regulation in those with defects in cholesterol uptake or transport. We next consider other cellular components derived from cholesterol, such as bile acids and steroid hormones. Finally, an outline of the biosynthetic pathways to some of the many compounds derived from isoprene units, which share early steps with the pathway to cholesterol, illustrates the extraordinary versatility of isoprenoid condensations in biosynthesis. 

Prenylation (covalent attachment of an isoprenoid see Fig. 27-30) is a common mechanism by which proteins are anchored to the inner surface of cellular membranes in mammals (see Fig. 11-14). In some of these proteins the attached lipid is the 15-carbon farnesyl group others have the 20-carbon geranylgeranyl group. Different enzymes attach the two types of lipids. It is possible that prenylation reactions target proteins to different membranes, depending on which lipid is attached. Protein prenylation is another important role for the isoprene derivatives of the pathway to cholesterol. 

A five-carbon isoprene unit—isopentenyl pyrophosphate (IPP)— is formed by the decarboxylation of 5-pyrophosphomevalonate. The reaction requires ATP. [Note IPP is the precursor of a family of molecules with diverse functions, the isoprenoids. Cholesterol is a sterol isoprenoid. Non-sterol isoprenoids include dolichol (see p. 165) and ubiquinone (see p. 75).]... 

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