Isopenicillin

Fig. 5. Biosynthesis of penicillins when ACV is aminoadipoly cysteinyl valine and IPNS is isopenicillin N synthase and CgH CH2COSCoA represents benzyl coenzyme A. ACV synthetase is thought to catalyze the first step of this reaction sequence.

The key enzyme in this sequence, isopenicillin N synthase (IPNS), has been purified from E. coli (59) and the recombinant enzyme shown to be a single polypeptide of 336 amino acids containing two cysteines, numbers 106 and 255 from the /V-teiminus, and probably a ferrous ion in a nonheme environment. The enzyme has been crystallized and studies undertaken to obtain suitably sized crystals for diffraction studies. 

The tripeptide LLD-ACV is then cydised to isopenicillin N by an oxidative reaction involving the removal of four protons. The enzyme that catalyses this reaction is isopenidllin N synthetase or synthase (IPNS). 

Figure 6.9 Formation of isopenicillin N from its constituent amino acids. After condensation of L-a-aminoadipic acid with L-cysteine, L-valine is coupled. During this transformation, the configuration of the latter amino acid inverts to give D-valine.

Figure 6.10 Biosynthetic pathways from isopenicillin N to penicillin G and cephalosporin C. Some strains have the ability to convert deacetylcephalosporin C into cephamycin C.

The building blocks for the biosynthesis of benzylpenicillin are three amino acids, a-aminoadipic acid, cysteine and valine, and PAA. The amino acids condense to a tripeptide, ring closure of which gives the penicillin ring structure with an cu-aminoadipyl side-chain, isopenicillin N. The side-chain is then displayed by a phenylacetyl group from PAA to give benzylpenicillin. 

Monooxygenase, Isopenicillin N synthase, Glutathione peroxidase, Methylmalonyl-CoA mutase, PLP-dependent b-lyase... 

The present chapter reviews applications in biocatalysis of the ONIOM method. The focus is on studies performed in our research group, in most cases using the two-layer ONIOM(QM MM) approach as implemented in Gaussian [23], The studied systems include methane monooxygenase (MMO), ribonucleotide reductase (RNR) [24, 25], isopenicillin N synthase (IPNS) [26], mammalian Glutathione peroxidase (GPx) [27,28], Bi2-dependent methylmalonyl-CoA mutase [29] and PLP-dependent P-lyase [30], These systems will be described in more detail in the following sections. ONIOM applications to enzymatic systems performed by other research groups will be only briefly described. 

Oxygen activation is a central theme in biochemistry and is performed by a wide range of different iron and copper enzymes. In addition to our studies of the dinuclear non-heme iron enzymes MMO and RNR, we also studied oxygen activation in the mononuclear non-heme iron enzyme isopenicillin N synthase (IPNS). This enzyme uses O2 to transform its substrate ACV to the penicillin precursor isopenicillin N [53], a key step in the synthesis of the important P-lactam antibiotics penicillins and cephalosporins [54, 55],... 

Figure 2-6. Real and model system used in ONIOM calculations of the reaction mechanism in isopenicillin N synthase...

When looking at the reaction mechanisms of glutathione peroxidase and isopenicillin N synthase, we did not find any reaction step where the transition state is significantly stabilized by long-range electrostatic interactions (i.e. electrostatic interactions outside the active-site model). However, it is should be added that most transition states have been calculated using ONIOM-ME. 

Dioxygen reduction (oxidase activity) and activation for incorporation into organic substrates are catalysed by a number of mononuclear non-haem iron enzymes. We will first consider the intramolecular dioxygenases, in which both atoms of oxygen are introduced into the substrate, then the monoxygenases (in which we choose to include the pterin-dependent hydroxylases), the large family of a-hetoacid-dependent enzymes, and finally isopenicillin N-synthase. 

The (5-lactam antibiotics are now so extensively described that we cannot attempt to summarize the literature. Since our emphasis is on sulfur, we note that the sulfur atoms of the thiazolidine or dihydrothiazine rings derive from a common tripeptide, 8-(L-a-aminoadipyl)-L-cysteinyl-D-valine 1, ACV or Arnstein tripeptide . ACV is converted to a (5-lactam structure, isopenicillin N 2 and thereafter, the two pathways diverge, i.e. to benzylpenicillin 3 or to cephalosporin C 4 (Scheme 1). There have been extensive studies of the genes and enzymes involved in (5-lactam biosynthesis.18,19... 

Figure 13.21 Mononuclear non-haem iron enzymes from each of the five families in structures which are poised for attack by 02. (a) The extradiol-cleaving catechol dioxygenase, 2,3-dihydroxy-biphenyl 1,2-dioxygenase (b) the Rieske dioxygenase, naphthalene 1,2-dioxygenase (c) isopenicillin N-synthase (d) the ot-ketoglutarate dependent enzyme clavaminate synthase and (e) the pterin-dependent phenylalanine hydroxylase. (From Koehntop et al., 2005. With kind permission of Springer Science and Business Media.)...

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