Hydrophobic acids, definition

The potential for the preservation of lipids is relatively high since by definition they are hydrophobic and not susceptible to hydrolysis by water, unlike most amino acids and DNA. A wide range of fatty acids, sterols, acylglycerols, and wax esters have been identified in visible surface debris on pottery fragments or as residues absorbed into the permeable ceramic matrix. Isolation of lipids from these matrices is achieved by solvent extraction of powdered samples and analysis is often by the powerful and sensitive technique of combined gas chromatography-mass spectrometry (GC-MS see Section 8.4). This approach has been successfully used for the identification of ancient lipid residues, contributing to the study of artifact... 

T4 lysozyme 33,497 helix stability of 528, 529 hydrophobic core stability of 533, 544 Tanford j8 value 544, 555, 578, 582-Temperature jump 137, 138, 541 protein folding 593 Terminal transferase 408,410 Ternary complex 120 Tertiary structure 22 Theorell-Chance mechanism 120 Thermodynamic cycles 125-131 acid denaturation 516,517 alchemical steps 129 double mutant cycles 129-131, 594 mutant cycles 129 specificity 381, 383 Thermolysin 22, 30,483-486 Thiamine pyrophosphate 62, 83 - 84 Thionesters 478 Thiol proteases 473,482 TNfn3 domain O-value analysis 594 folding kinetics 552 Torsion angle 16-18 Tbs-L-phenylalanine chloromethyl ketone (TPCK) 278, 475 Transaldolase 79 Tyransducin-o 315-317 Transit time 123-125 Transition state 47-49 definition 55... 

There are two definitions of protein hydrophobicity average hydrophobicity and surface hydrophobicity. The average hydrophobicity was defined by Bigelow (1967) as the total hydrophobicity of all amino acid residues comprising a protein divided by the number of amino acids in the protein. There is no standard definition of surface (or effective) hydrophobicity except the concept that there must be hydrophobic regions on the molecular surface that play an effective role in protein function. Readers who are interested in a more detailed discussion are referred to Nakai and Li-Chan (1988). 

Various separation methods have been used to isolate, fractionate, and characterize humic materials. Originally it was fractionation, based on solubility differences of humic components in diluted alkalis and acids, which laid the ground work for the first classifications of humic substances (HS) in the 19th century (Mulder, 1861 Sprengel, 1837) and provided for operational definition of HS (Kononova, 1966). And now, alkali extraction is the method of choice for isolating HS from solid humus-containing substrates like soil, peat, coal, and so on (Swift, 1996), while hydrophobic resins (e.g., Amberlite XAD resins) are typically used to extract HS dissolved in natural waters (Aiken, 1985). Initial research on HS began with the used simple separation methods to prove, examine, and define characteristics of components of humic matter (Oden, 1919).Today, however, advances in HS research require ever more sophisticated techniques of separation combined with structural analysis (Orlov, 1990 Stevenson, 1994). 

Protein chains generally contain hydrophobic, hydrophilic and/or charged amino acid residues, which can be regarded as amphiphilic copolymers in a broad definition. The coordinate and cooperative interactions, such as... 

Lipids are far more diverse chemically than other typical biomolecules such as amino acids, carbohydrates, and nucleotides. The definition of lipids includes simple fatty acids and their glycerol esters, sterols such as cholesterol, and phospholipids, sphingolipids, and cerebrosides. Lipids are generally defined by their common hydrophobic character, which makes them soluble in organic solvents such as chloroform. Virtually all lipids also have a hydrophilic group, which makes them surface active. 

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