Guanidine hydrochlorides

Folded proteins can be caused to spontaneously unfold upon being exposed to chaotropic agents, such as urea or guanidine hydrochloride (Gdn), or to elevated temperature (thermal denaturation). As solution conditions are changed by addition of denaturant, the mole fraction of denatured protein increases from a minimum of zero to a maximum of 1.0 in a characteristic unfolding isotherm (Fig. 7a). From a plot such as Figure 7a one can determine the concentration of denaturant, or the temperature in the case of thermal denaturation, required to achieve half maximal unfolding, ie, where... 

Chemical lysis, or solubilization of the cell wall, is typically carried out using detergents such as Triton X-100, or the chaotropes urea, and guanidine hydrochloride. This approach does have the disadvantage that it can lead to some denaturation or degradation of the produci. While favored for laboratory cell disruption, these methods are not typically used at the larger scales. Enzymatic destruction of the cell walls is also possible, and as more economical routes to the development of appropriate enzymes are developed, this approach could find industrial application. Again, the removal of these additives is an issue. 

Columns can be washed with solvents and solvent combinations suitable to remove adsorbed contaminants. When considering the adsorption of analytes, think not only of the diol functionality, but also of the adsorption to residual silanols. Often, the injection of small amounts (500 /d) of dimethyl sulfoxide removes contamination that has accumulated on the column. Aqueous solutions of sodium dodecyl sulfate, guanidine hydrochloride, or urea are compatible with Protein-Pak columns. 

A new protein of unknown structure has been purified. Gel filtration chromatography reveals that the native protein has a molecular weight of 240,000. Chromatography in the presence of 6 M guanidine hydrochloride yields only a peak for a protein of M, 60,000. Chromatography in the presence of 6 M guanidine hydrochloride and 10 mM /3-mercaptoethanol yields peaks for proteins of M, 34,000 and 26,000. Explain what can be determined about the structure of this protein from these data. 

Rolgamidine (14) is a dihydropyrrole derivative which has antidiarrheal activity It can be synthesized by alkylation of trans 2,5-dimethyl-3 pyrroline (12) with methyl bromoacefate to give 13 An amide-ester exchange reaction with guanidine hydrochloride completes the synthesis of rolgamidine (14) [3]... 

Step C Preparation ofthebase-A 300 ml one-necked, round-bottomed flask, equipped with a water-cooled condenser, calcium chloride tube and magnetic stirrer is charged with anhydrous methanol (150 ml) and sodium metal (5.75 g,0.25 g atom). When the reaction is complete, the solution is treated with dry guanidine hydrochloride (26.3 g, 0.275 mol) and stirred for 10 minutes. The sodium chloride that forms is removed by filtration. The solution is concentrated in vacuo to a volume of 30 ml and the residue treated with the product of Step B, heated one minute on a steam bath and kept at 25°C for 1 hour. The product is filtered, washed well with water, dissolved In dilute hydrochloric acid and the free base precipitated by addition of sodium hydroxide to give the amllorlde product base, a solid which melts at 240.5°-241.5°C. 

Fig. 6.2.5 Fluorescence spectra of pholasin after treatment with 5M guanidine hydrochloride. Left, excitation spectrum measured at 460 nm right, emission spectrum measured with excitation at 360 nm. From Henry et al., 1973, with permission from Elsevier.

Nucleic acid extraction protocols using guanidine hydrochloride, sodium sarco-syl, and ethanol have been developed to quantify viral RNA by bDNA in lymph node tissue, liver tissue, and peripheral blood monocytes (Wilber and Urdea, 1995). 

Roberts et al. (1966) described a similar synthesis cyanoacetaldehyde and guanidine hydrochloride gave 40-80% yields of 2,4-diaminopyrimidine under the conditions of the lagoon model mentioned above. Hydrolysis of diaminopyrimi-dine leads to cytosine, isocytosine and uracil. Thiourea reacts with cyanoacetylene to give 2-thiocytosine however, the yield is considerably lower than with urea or... 

Fig. 5.9 Product formation rates as a function of time. Matrix-dependent formation a of the homochiral products Tll and TDD, b of the heterochiral products TDL and TLD and c using the same conditions as in a and b, except for the addition of 3 M guanidine hydrochloride (Saghatelian et al., 2001)...

Dissolve a disulfide-containing protein or peptide at a concentration of l-10mg/ml in 6M guanidine hydrochloride, 0.01 M sodium phosphate, 0.15 M NaCl, pH 7.4. Alternative... 

Wash the column with 10ml of equilibration buffer-1 and 10ml of 0.1 M sodium phosphate buffer, pH 8.0 containing ImM EDTA and 6M guanidine hydrochloride (equilibration buffer-2) to remove free DTT. 

Ethylenimine may be used to introduce additional sites of tryptic cleavage for protein structural studies. In this case, complete sulfhydryl modification is usually desired. Proteins are treated with ethylenimine under denaturing conditions (6-8 M guanidine hydrochloride) in the presence of a disulfide reductant to reduce any disulfide bonds before modification. Ethylenimine may be added directly to the reducing solution in excess (similar to the procedure for Aminoethyl-8 described previously) to totally modify the —SH groups formed. 

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