Genetic code specificity

The cell must possess the machinery necessary to translate information accurately and efficiently from the nucleotide sequence of an mRNA into the sequence of amino acids of the corresponding specific protein. Clarification of our understanding of this process, which is termed translation, awaited deciphering of the genetic code. It was realized early that mRNA molecules themselves have no affinity for amino acids and, therefore, that the translation of the information in the mRNA nucleotide sequence into the amino acid sequence of a protein requires an intermediate adapter molecule. This adapter molecule must recognize a specific nucleotide sequence on the one hand as well as a specific amino acid on the other. With such an adapter molecule, the cell can direct a specific amino acid into the proper sequential position of a protein during its synthesis as dictated by the nucleotide sequence of the specific mRNA. In fact, the functional groups of the amino acids do not themselves actually come into contact with the mRNA template. 

Twenty different amino acids are required for the synthesis of the cellular complement of proteins thus, there must be at least 20 distinct codons that make up the genetic code. Since there are only four different nucleotides in mRNA, each codon must consist of more than a single purine or pyrimidine nucleotide. Codons consisting of two nucleotides each could provide for only 16 (4 ) specific codons, whereas codons of three nucleotides could provide 64 4 ) specific codons. 

The information contained in the DNA (i.e., the order of the nucleotides) is first transcribed into RNA. The messenger RNA thus formed interacts with the amino-acid-charged tRNA molecules at specific cell organelles, the ribosomes. The loading of the tRNA with the necessary amino acids is carried out with the help of aminoacyl-tRNA synthetases (see Sect. 5.3.2). Each separate amino acid has its own tRNA species, i.e., there must be at least 20 different tRNA molecules in the cells. The tRNAs contain a nucleotide triplet (the anticodon), which interacts with the codon of the mRNA in a Watson-Crick manner. It is clear from the genetic code that the different amino acids have different numbers of codons thus, serine, leucine and arginine each have 6 codewords, while methionine and tryptophan are defined by only one single nucleotide triplet. 

The azo reductases in aerobic bacteria were found to be existent when azoreductases from obligate aerobic bacteria were isolated and characterized from strains K22 and KF46 and were shown to be flavin-free after purification, characterization, and comparison 364, 362,363. These intracellular azoreductases showed high specificity to dye structures. Furthermore, Blumel and Stolz cloned and characterized the genetic code of the aerobic azo reductase from Pagmentiphaga... 

The genetic code is composed of four letters —two pyrimidine nitrogenous bases, thymine and cytosine, and two purine bases, guanine and adenine—which can be regarded functionally as arranged in codons (or triplets). Each codon consists of a combination of three letters therefore, 43 (64) different codons are possible. Sixty-one codons code for specific amino acids (three produce stop signals), and as only 20 different amino acids are used to make proteins, one amino acid can be specified by more than one codon. 

One of the basic units of genetic information in the genetic code is the codon, which is a specific tri-nucleotide sequence (triplet). There are four nucleotide bases ( letters ) which can be arranged in three-letter combinations, making 64 possible codons (4 combinations) (see Figure 2.5). 

In addition to using auxotrophic strains of naturally occurring amino acids, the laboratory of Peter Schultz has developed very elegant methods to incorporate labeled amino acids in specific positions of a protein by extending the genetic code of prokaryotic as well as eukaryotic cells [26,27]. The... 

Three major components in the transmission of genetic information are deoxyribonucleic acids (DNA), ribonucleic acids (RNA), and proteins. The genetic code expressed through DNA ultimately determines which proteins a cell will produce. Coiled and supercoiled DNA molecules contain numerous sequences of nucleotides that may be transcribed as RNAs and translated to many different proteins. DNA molecules also contain long sequences of nucleotides not coding for protein and whose purpose is not completely understood. A gene is a specific sequence of DNA that encodes a sequence of messenger... 

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