Gels simulations

M. M. Chang and H. W. Gao. User s guide and documentation manual for PC-Gel simulator Topical report. US DOE Fossil Energy Rep NIPER-705, NIPER, October 1993. 

Baneijee R, Bellare J, Puniyani R. Effect of phospholipid mixtures and surfactant formulations on rheology of polymeric gels, simulating mucus, at shear rates experienced in the tracheobronchial tree. Biochem Eng J 2001, 7, 195-200. 

Fig. 8.3 Time development of tilt. The peptide is tilted in LC and DMPC/ gel simulations. In DPPC/ gel was peptide bended (see Table 8.1, angle between 1st and 2nd half of peptide)...

Aromatic and Nonaromatic Hydrocarbon Separation. Aromatics are partially removed from kerosines and jet fuels to improve smoke point and burning characteristics. This removal is commonly accompHshed by hydroprocessing, but can also be achieved by Hquid-Hquid extraction with solvents, such as furfural, or by adsorptive separation. Table 7 shows the results of a simulated moving-bed pilot-plant test using siHca gel adsorbent and feedstock components mainly in the C q—range. The extent of extraction does not vary gready for each of the various species of aromatics present. SiHca gel tends to extract all aromatics from nonaromatics (89). 

Whereas the main challenge for the first bilayer simulations has been to obtain stable bilayers with properties (e.g., densities) which compare well with experiments, more and more complex problems can be tackled nowadays. For example, lipid bilayers were set up and compared in different phases (the fluid, the gel, the ripple phase) [67,68,76,81]. The formation of large pores and the structure of water in these water channels have been studied [80,81], and the forces acting on lipids which are pulled out of a membrane have been measured [82]. The bilayer systems themselves are also becoming more complex. Bilayers made of complicated amphiphiles such as unsaturated lipids have been considered [83,84]. The effect of adding cholesterol has been investigated [85,86]. An increasing number of studies are concerned with the important complex of hpid/protein interactions [87-89] and, in particular, with the structure of ion channels [90-92]. 

The chromatographic resolution of bi-naphthol enantiomers was considered for simulation purposes [18]. The chiral stationary phase is 3,5-dinitrobenzoyl phenyl-glycine bonded to silica gel and a mixture of 72 28 (v/v) heptane/isopropanol was used as eluent. The adsorption equilibrium isotherms, measured at 25 °C, are of bi-Langmuir type and were proposed by the Separex group ... 

Kinetic gelation simulations seek to follow the reaction kinetics of monomers and growing chains in space and time using lattice models [43]. In one example, Bowen and Peppas [155] considered homopolymerization of tetrafunctional monomers, decay of initiator molecules, and motion of monomers in the lattice network. Extensive kinetic simulations such as this can provide information on how the structure of the gel and the conversion of monomer change during the course of gelation. Application of this type of model to polyacrylamide gels and comparison to experimental data has not been reported. 

Torkelson and coworkers [274,275] have developed kinetic models to describe the formation of gels in free-radical pol5nnerization. They have incorporated diffusion limitations into the kinetic coefficient for radical termination and have compared their simulations to experimental results on methyl methacrylate polymerization. A basic kinetic model with initiation, propagation, and termination steps, including the diffusion hmitations, was found to describe the gelation effect, or time for gel formation, of several samples sets of experimental data. 

Subsequent work by Johansson and Lofroth [183] compared this result with those obtained from Brownian dynamics simulation of hard-sphere diffusion in polymer networks of wormlike chains. They concluded that their theory gave excellent agreement for small particles. For larger particles, the theory predicted a faster diffusion than was observed. They have also compared the diffusion coefficients from Eq. (73) to the experimental values [182] for diffusion of poly(ethylene glycol) in k-carrageenan gels and solutions. It was found that their theory can successfully predict the diffusion of solutes in both flexible and stiff polymer systems. Equation (73) is an example of the so-called stretched exponential function discussed further later. 

Johansson, L Lofroth, J-E, Diffusion and Interaction in Gels and Solutions. 4 Hard Sphere Brownian Dynamics Simulations, Journal of Chemical Physics 98, 7471, 1993. 

Moussaid, A Pusey, PN Slot, JJM Joosten, JGH, Simulation of Scattering Properties of Gels, Macromolecules 32, 3774, 1999. 

PC-GEL 3-dimensional, 3-phase (oil, water, and gas) permeability modification simulator [348]... 

Figure 2.4. Peptide fingerprinting by MALDI-TOF mass Spectrometry. Proteins are extracted and separated on by 2D gel electrophoresis. A spot of interest is excised from the gel, digested with trypsin, and ionized by MALDI. The precise mass of proteolytic fragments is determined by time-of- flight mass spectrometry. The identity of the protein is determined by comparing the peptide masses with a list of peptide masses generated by a simulated digestion of all of the open reading frames of the organism.

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