Frame shift

A surprising and unique feature of the human VN genome is not its small size, but that it exists at all. Of the eight loci located, seven are inoperative, due to frame-shifts and/or stop codons the one potentially functional gene, named V1RL1, was found in all individuals from a... 

Hung, M., Patel, P., Davis, S., and Green, S. R. (1998). Importance of ribosomal frame-shifting for human immunodeficiency virus type 1 particle assembly and replication. J. Virol. 72, 4819-4824. 

Luminescent bacteria also allow detection of the carcinogenic effect of ge-notoxics. A dark mutant of a Photobacterium or Vibrio strain that can revert back to luminescence at an increased rate in the presence of base-substitutes or frame-shifts agents, DNA-damaging agents, DNA synthesis inhibitors, and DNA intercalating agents can be employed [171, 172],... 

Figure 2.18 Frame shift mutation caused by insertion of one base, G.

Figure 2. Genetic aberrations observed in HAT genes, (a) Schematic representation of a balanced chromosomal translocation. These translocations result in the formation two new fusion genes, which can give rise to one or two fusion proteins, (b) Examples of nonsense (RTS patient RT163.1), missense (RT209.1), deletion (followed by frame shift RT231.1) mutations, as well as sphee site acceptor (RT211.3) or splice site donor (RT39.1) mutations...

Pai HV, Kommaddi RP, Chinta SJ, Mori T, Boyd MR, et al. 2004. A frame-shift mutation and alternate splicing in human brain generates a functional form of the pseudogene, cytochrome P4502D7 that demethylates codeine to morphine. J Biol Chem 279 27383-27389. 

Answer B. In-frame deletions or insertions typically produce an altered protein product (dystrophin), but the alteration is mild enough so that Becker muscular dystrophy results. Frame-shifts usually produce a truncated protein because a stop codon is eventually encountered. The truncated protein is degraded, resulting in an absence of dystrophin and a more severe disease phenotype. 

A variety of AVPR2 nonsense mutations causes the most severely affected NDI phenotypes (121). Although truncation frequently occurs within TM domain 3, severe phenotypes have also been reported as a consequence of the Argl37His mutation. The Argl37His mutation is representative of variant receptors that are unable to activate stimulatory Gs proteins (122). The receptor fails to respond to agonist through stimulated adenylyl cyclase activity. Many other A VW 2 mutations, such as frame-shift and small in-frame deletions, also result in AVPR2s that fail to couple to G a (123). 

Konishi, Y., Beach, T., Sue, L.I., et al. (2003) The temporal localization of frame-shift ubiq-uitin-B and amyloid precursor protein, and complement proteins in the brain of non-demented control patients with increasing Alzheimer s disease pathology. Neurosci. Lett., 348, 46-50. 

Karl M, Von Wichert G, Kempter E, et al. (1996) Nelson s syndrome associated with a somatic frame shift mutation in the glucocorticoid receptor gene. J Clin Endocrinol Metab. 81, 124-129. 

These experiments make it clear that removing competition with release factors leads to more efficient incorporation of the desired amino acid. Unfortunately, the technology to incorporate nonstandard nucleotides into mRNAs coding for full-length proteins is not yet available. Alternatives that have been tested include using (i) a 4-nucleotide codon-anticodon pair, dubbed frame-shift suppression (Sect. 6.1), (ii) a rare codon, and (iii) cell-free extracts from organisms that are either deficient in a release factor (Sect. 5.1) or unable to translate one or more codons (Sect. 6.2). 

One advantage of the frame-shift suppression system is that it offers the potential to site-spedfically introduce more than one noncoded amino acid into a protein if the yields can be increased. Kanda and co-workers have attempted... 

Nitrous acid causes point mutations (1). For example, C is converted to U, which in the next replication pairs with A instead of G. The alteration thus becomes permanent. Mutations in which a number of nucleotides not divisible by three are inserted or removed lead to reading errors in whole segments of DNA, as they move the reading frame (frame-shift mutations). This is shown in Fig. 2 using a simple example. From the inserted C onwards, the resulting mRNA is interpreted differently during translation, producing a completely new protein sequence. 

Target the 30S subunit, primarily causing a frame-shift in the codon, leading to the failure of the synthesis of the correct proteins or the incorrecting folding of proteins. The susceptible bacteria are destroyed as they cannot make the correct proteins when and as needed. 

When a stop codon is found at the exon region or a frame shift occurs by insertion or deletion, the gene is defined as a pseudogene (rrrNote 1). 

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