Fmoc using

Derivatization is useful for detection of compounds such as amino acids and amines that lack easily detectable groups. For similar reasons, saccharides, as a class of compound, ehcit much interest. Two derivatization schemes have been reported using benzamide (61) and FMOC—hydrazine (62) to produce fluorescent products. 

The carboxamidomethyl ester was prepared for use in peptide synthesis. It is formed from the cesium salt of an A-protected amino acid and a-chloroacetamide (60-85% yield). It is cleaved with 0.5 M NaOH or NaHCOa in DMF/H2O. It is stable to the conditions required to remove BOC, Cbz, Fmoc, and r-butyl esters. It cannot be selectively cleaved in the presence of a benzyl ester of aspartic acid. ... 

Mel, CH3CN morpholine or diethylamine, methanol, 76-95% yield. These conditions also cleave tlie 4 -pyridyl derivative. The Pet ester is stable to the acidic conditions required to remove the BOC and r-butyl ester groups, to the basic conditions required to remove the Fmoc and Fm groups, and to hydrogenolysis. It is not recommended for use in peptides that contain methionine or histidine since these are susceptible to alkylation with methyl iodide. 

Piperazine attached to a polymer has also been used to cleave the Fmoc group. 

Thermitase, pH 7.5, 55°, 50% DMSO, 3-140 min. This method was used to avoid the degradation of base-sensitive side chains during peptide synthesis. The method is compatible with the Fmoc group. ... 

This tertiary ester was developed to reduce aspartimide and piperidide formation during the Fmoc-based peptide synthesis by increasing the steric bulk around the carboxyl carbon. A twofold improvement was achieved over the the standard Fbutyl ester. The Mpe ester is prepared from the acid chloride and the alcohol and can be cleaved under conditions similar to those used for the r-butyl ester. ... 

This active ester was used for carboxyl protection of Fmoc-serine and Fmoc-threonine during glycosylation. The esters are then used as active esters in peptide synthesis. 

The Dmab group was developed for glutamic acid protection during Fmoc/r-Bu based peptide synthesis. The group shows excellent acid stability and stability toward 20% piperidine in DMF. It is formed from the alcohol using the DCC protocol for ester formation and is cleaved with 2% hydrazine in DMF at rt. ... 

For a review of the use of Fmoc protection in peptide synthesis, see E. Atherton and R. C. Sheppard, The Fluorenylmethoxycarbonyl Amino Protecting Group, in The... 

The DNP derivative, prepared from 2,4-dinitrofluorobenzene is released from the nitrogen with an anionic ion exchange resin." When used for histidine protection, the DNP group has been observed to migrate to nearby [ysine residues during Fmoc cleavage. ... 

When the Ac group is removed (20% piperidine/DMF or 5% hydrazine/DMF), it becomes the Hmb group that is used to improve solubility and prevent aspar-tamide formation and is readily cleaved with TFA. The related 2-Fmoc-4-methoxybenzyl group has also been prepared and used in peptide synthesis. ... 

K2CO3 is used to remove the Fmoc group instead of the usual amines. 

The details of the solid-phase technique have been improved substantially over the years, but the fundamental idea remains the same. The most commonly used resins at present are either the Wang resin or the PAM (phenyl-acetamidomethyl) resin, and the most commonly used N-protecting group is the fluorenylmethyloxycarbonyl, or Fmoc group, rather than Boc. 

At this stage of the synthesis, it was convenient to protect the secondary amino function in 56 as the base-labile FMOC derivative22 through the use of the corresponding chloroformate (96% yield). In the planning phase, the selection of an FMOC protecting... 

The submitters performed the reaction using a 0.12 mmol excess of Fmoc-L-Asp-Ot-Bu, under which conditions aminomethylated polystyrene resin was required to remove the excess carboxylic acid (Note 13). The checkers modified the reaction to use 0.28 mmol excess Disperse Red 1. The initial Amberlyst-15 filtration removes this material. 

Investigation of the microwave-assisted attachment of Fmoc-protected amino acids onto 2-chlorotrityl chloride resin indicated higher loadings and increased rates compared to standard room temperature procedures [146]. In this comparative study standard procedures yielded 0.37 mmol/g loading after 1 hour, whereas at 110 °C using microwave dielectric heating, a similar result (0.38 mmol/g) was obtained after only 15 min (Fig. 7). 

R. M.J. Solid-phase syntheses of peptoids using Fmoc-protected N-substituted glycines The synthesis of (retro) peptoids of leu-enkephalin and substance P. Euro. J. Chem. 1998, 4, 1570-1580. 

The investigation of minor groove-binding polyamides was greatly accelerated by the implementation of solid-phase synthesis [48]. Originally demonstrated on Boc-y9-Ala-PAM resin with Boc-protected monomers, it was also shown that Fmoc chemistry could be employed with suitably protected monomers and Fmoc-y9-Ala-Wang resin (Fig. 3.8) [49]. Recently, Pessi and coworkers used a sulfonamide-based safety-catch resin to prepare derivatives of hairpin polyamides [50]. Upon activation of the linker, resin-bound polyamides were readily cleaved with stoichiometric quantities of nucleophile to provide thioesters or peptide conjugates. 

Fig. 3.8 Variations to solid phase synthesis of polyamides. Use of Fmoc monomers on jS-Ala-Wang resin (left) provides polyamides containing a jS-alanine residue near the C-ter-mini. Polyamides synthesized on the Kaiser...

N -Fmoc serine benzyl ester 2, which could be prepared as shown or purchased commercially, was smoothly converted to the crystalHne O-methylthiomethyl (MTM) ether 3 in high yield via a Pummerer-Hke reaction using benzoyl peroxide and dimethyl sulfide in acetonitrile [39]. This common intermediate was used to synthesize both 5 and 8 [40]. Both Ogilvie [41] and Tsantrizos [42] had reported that I2 was an effective activator with similar MTM ether substrates. The H promoted nucleosidation reaction between O-MTM ether 3 and bis-silylated thymine 4 produced the nucleoamino acid 5 in 60% isolated yield (100% based on recovered 3). Hydrogenolytic deprotection of the benzyl ester with H2, Pd/C in MeOH gave the thymine-containing nucleoamino acid 6 in quantitative yield. 

In SPPS, there are two main protecting groups commonly used for Ai -protection [3] ferf-butoxycarbonyl (Boc) [7] and 9-fluorenylmethoxycarbonyl (Fmoc) [8] (Fig. 2). 

In the Fmoc protection approach, the acid-labile ferf-butyl groups are often used for side-chain protection. The base-labile Fmoc groups can be easily removed during a synthesis using piperidine (Fig. 4). The final global deprotection together with cleavage from the polymeric support is achieved with TFA. 

Another competing cyclisation during peptide synthesis is the formation of aspartimides from aspartic acid residues [15]. This problem is common with the aspartic acid-glycine sequence in the peptide backbone and can take place under both acidic and basic conditions (Fig. 9). In the acid-catalysed aspartimide formation, subsequent hydrolysis of the imide-containing peptide leads to a mixture of the desired peptide and a (3-peptide. The side-chain carboxyl group of this (3-peptide will become a part of the new peptide backbone. In the base-catalysed aspartimide formation, the presence of piperidine used during Fmoc group deprotection results in the formation of peptide piperidines. 

P 14] For the reaction of the pentafluorophenyl ester of Fmoc-y9-alanine with Dmab-y0-alanine, a similar protocol to that for [P 13] was used [5, 88]. 

OS 16] ]R 5] ]P 13] Using continuous flow in an electroosmotic-driven micro reactor gave a quantitative yield of the dipeptide in only 20 min (600 V for Dmab-/ -alanine 700 V for the Fmoc ester) [5, 88]. Batch synthesis under the same conditions gave only a 40-50% yield [5] (46% in [5]), needing 24 h. 

OS 18] ]R 5] ]P 13] (adapted) The same was done using Fmoc-L-y9-homo-p-chlorophenylalanine [5]. Batch, 36% micro reactor, quantitative in 20 min. 

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