FAD-dependent oxidase

Figure 22.5 Aerobic versus anaerobic electrochemical activation of FAD-dependent oxidases.

HA Hartman, DE Edmondson, DB McCormick. Riboflavin 5 -pyrophosphate a contaminant of commercial FAD, a coenzyme for FAD-dependent oxidases, and an inhibitor of FAD synthetase. Anal Biochem 202 348-355, 1992. 

Gesell, A., et al.. Heterologous expression of two FAD -dependent oxidases with (S)-tetrahydroprotoberberine oxidase activity from Arge mone mexicana and Berberis wilsoniae in insect cells. Planta, 2011. 233(6) p. 1185-97. 

As mentioned previously, for FAD-dependent oxidases, the cofactor is regenerated by reaction with dissolved o>ygen, producing hydrogen peroxide, shown in Fig. lA. This category of biosensors operates by... 

Peroxisomal /3-Oxidation Requires FAD-Dependent Acyl-CoA Oxidase... 

Abnormalities of the respiratoiy chain. These are increasingly identified as the hallmark of mitochondrial diseases or mitochondrial encephalomyopathies [13]. They can be identified on the basis of polarographic studies showing differential impairment in the ability of isolated intact mitochondria to use different substrates. For example, defective respiration with NAD-dependent substrates, such as pyruvate and malate, but normal respiration with FAD-dependent substrates, such as succinate, suggests an isolated defect of complex I (Fig. 42-3). However, defective respiration with both types of substrates in the presence of normal cytochrome c oxidase activity, also termed complex IV, localizes the lesions to complex III (Fig. 42-3). Because frozen muscle is much more commonly available than fresh tissue, electron transport is usually measured through discrete portions of the respiratory chain. Thus, isolated defects of NADH-cytochrome c reductase, or NADH-coenzyme Q (CoQ) reductase suggest a problem within complex I, while a simultaneous defect of NADH and succinate-cytochrome c reductase activities points to a biochemical error in complex III (Fig. 42-3). Isolated defects of complex III can be confirmed by measuring reduced CoQ-cytochrome c reductase activity. 

Polyamine oxidase (amine oxygen oxidoreductase, deaminating, flavin-containing), is also a FAD-dependent enzyme and has many similarities to MAO. It is responsible for the oxidation of the secondary amino group in such substrates as A/-acetyl spermine and spermidine in the biosynthesis of spermidine and putrescine [1,12], This enzyme will not be covered in this chapter. 

MPTP is also metabolized by other routes involving cytochromes P-450, FAD-dependent monooxygenases, and aldehyde oxidase. However, these seem to be detoxication pathways, as they divert MPTP away from uptake and metabolism in the brain. However, MPTP may inhibit its own metabolism by cytochromes P-450 and thereby reduce one means of detoxication. This example illustrates the importance of structure and physicochemical properties in toxicology. MPTP is sufficiently lipophilic to cross the blood-brain barrier and gain access to the astrocytes. The structure of the metabolite is important for uptake via the dopamine system, hence localizing the compound to a particular type of neuron. Again, uptake into mitochondria is presumably a function of structure, as a specific energy-dependent carrier is involved. 

D-Amino acid oxidase D-Amino acids (see p. 5) are found in plants and in the cell walls of microorganisms, but are not used in the synthesis of mammalian proteins. D-Amino acids are, hew ever, present in the diet, and are efficiently metabolized by 1he liver. D-Amino acid oxidase is an FAD-dependent enzyme that catalyzes the oxidative deamination of these amino acid isomers. The resulting a-ketoacids can enter the general pathways of amino acid metabolism, and be reaminated to L-isomers, or cafe balized for energy. 

Monoamine oxidase (MAO) serves as a marker enzyme for outer membrane. There is some MAO activity in the inner membrane and therefore also in SMPs however, a high level of monoamine oxidase in the SMP preparation indicates a large contamination by outer membrane. Mitochondrial monoamine oxidase is an FAD-dependent enzyme that catalyzes the oxidation of amines to aldehydes (Equation E10.2). A convenient assay for this enzyme uses benzylamine as substrate and monitors the rate of ben-zaldehyde production at 250 nm. 

Kynurenine Hydroxylase Kynurenine hydroxylase is an FAD-dependent mixed-function oxidase of the outer mitochondrial membrane, which uses NADPH as the reductant. The activity of kynurenine hydroxylase in the liver of riboflavin-deficient rats is only 30% to 50% of that in control animals, and deficient rats excrete abnormally large amounts of kynurenic and anthranilic acids after the administration of a loading dose of tryptophan, and, correspondingly lower amounts of quinolinate and niacin metabolites. Riboflavin deficiency may thus be a contributory factor in the etiology of pellagra when intakes of tryptophan and niacin are marginal (Section 8.5.1). 

Pyruvate oxidase (Pyox) is a FAD- and thiamine diphosphate (ThDP)-dependent enzyme that catalyzes the reaction of pyruvate to give acetyl phosphate or vice versa (see Fig. 15). If used in the oxidative way, it can be activated and reactivated under nonaerobic conditions using ferrocene mediators. Kinetic parameters of the indirect electrochemical process using the enzyme incorporated into a biomimetic supported bilayer at a gold electrode have been reported [142]. Similarly, FAD-dependent amino oxidases may also be applied. 

MPTP is metabolized by other routes involving cytochromes P-450, FAD-dependent mono-oxygenases and aldehyde oxidase. 

Tittmann, K., Wille, G., Golbik, R., Weidner, a., Ghisia, S., Hubner, G. (2005b), Radical phosphate transfer mechanism for the thiamin diphosphate-and FAD-dependent pyruvate oxidase from Lactobacillus plantarum. Kinetic coupling of intercofactor electron transfer with phosphate transfer to acetyl-thiamin diphosphate via transient FAD semiquinone/hydroxyethyl-ThDP radical pair. Biochemistry 44, 13291-13303. 

The aliphatic alcohol oxidase, a FAD-dependent enzyme, catalyzes the oxidation of primary short-chain alcohols to the corresponding aldehydes. Dioxygen can be replaced by synthetic acceptors such as dichlorophenolindophenol or phenazine methosulfate [147l... 

The catabolic pathway of vitamin Bg (1) is probably the best studied. In animals (including humans) 4-pyridoxic acid (4) is the primary catabolic product of vitamin Bg, found in urine. It is formed by the oxidation of pyridoxal (2) by a nonspecific flavin adenine dinucleotide (FAD)-dependent aldehyde oxidase. The catalytically active form of vitamin Bg, pyridoxal-5 -phosphate, PLP (17), does not undergo similar oxidation to form 4. The various forms of vitamin Bg (1, 2, 15) and their respective phosphate esters (16, 17) are readily enzymatically interconvertible. Further degradation of 4 is unlikely in humans as the subjects administered with doses of 4 were found to excrete it quantitatively. Estimation of 4 in urine serves as a nutritional marker, as lower than normal amounts of 4 is indicative of vitamin Bg deficiency. ... 

A peculiar sugar modification occurs in the biosynthesis of the aclacino-mycins. These anthracyclines contain a trisaccharide moiety attached to the aklavinone scaffold at the C-7 position (Scheme 1). The first two carbohydrates in the aclacinomycins are rhodosamine and 2-deoxyfucose, but they differ structurally in their third sugar component, which is rhodinose in AclN, cinerulose A in AclA, L-aculose in AclY and cinerulose B in AclB [157]. The conversion of rhodinose to L-aculose is catalysed in a two-step process by the FAD-dependent enzyme aclacinomycin oxidoreductase [71] (Scheme 5, step 31). The three-dimensional structure of this oxidase revealed that the cofactor FAD is bound via two covalent bonds to the enzyme. Crystal structure and functional data further established a mechanism where the two different reactions are catalysed in the same active site of the enzyme but by different active site residues [71]. 

Following the discovery of peroxisomal long chain fatty acid P-oxidation in rat liver and its induction by hypolipidemic drugs, the involved enzjmes were characterized mainly by Hashimoto, Osumi and coworkers in hver from induced rats. This resulted in the following picture. After activation, the CoA-esters are desatured by an FAD-dependent acyl-CoA oxidase. The formed 2-trcms noy -CxiA is hydrated to a 3-L-hydrox-yacyl-CoA that is subsequently dehydrogenated to a 3-oxoacyl-CoA. These reactions are... 

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