Enzymes tuning

Directed Evolution - Enzyme Tuning Toward Higher Selectivity... 

Figure 1.20). All of these reactions, many of which are at apparent crosspurposes in the cell, must be fine-tuned and integrated so that metabolism and life proceed harmoniously. The need for metabolic regulation is obvious. This metabolic regulation is achieved through controls on enzyme activity so that the rates of cellular reactions are appropriate to cellular requirements. 

Basically, there are three ways to tune enzyme enantioselectivity by means of additives (i) the additives are placed in the reaction medium together with the organic solvent, the enzyme, and the reagents (ii) the additives are co-lyophilized with the biocatalyst before use in the organic solvent (iii) the additives are complexed with the substrates before their transformation in the organic medium. 

In hiphasic water/1L mixtures, the latter can he used as immohilization systems. This idea was used for the synthesis of conducting polyanihne hy IL-immohilized horseradish peroxidase [68]. Tuning the IL hydrophohicity hy changing the anionic component allowed the increase in the yield of the product hy altering the affinity of the product to the IL. After completion of the reaction, the IL phase was separated, facilitating the recovery of the enzyme. 

When the target enzyme is difficult to obtain, related enzymes could be used to provide insights in the design of novel ligands. For example, papain was used to design a class of potent cathepsin K inhibitors [33] spanning both sides of the papain active site. However, fine-tuning these inhibitors to produce more potent ones required the use of the crystal structure of cathepsin K itself [34],... 

When supported complexes are the catalysts, two types of ionic solid were used zeolites and clays. The structures of these solids (microporous and lamellar respectively) help to improve the stability of the complex catalyst under the reaction conditions by preventing the catalytic species from undergoing dimerization or aggregation, both phenomena which are known to be deactivating. In some cases, the pore walls can tune the selectivity of the reaction by steric effects. The strong similarities of zeolites with the protein portion of natural enzymes was emphasized by Herron.20 The protein protects the active site from side reactions, sieves the substrate molecules, and provides a stereochemically demanding void. Metal complexes have been encapsulated in zeolites, successfully mimicking metalloenzymes for oxidation reactions. Two methods of synthesis of such encapsulated/intercalated complexes have been tested, as follows. 

Lanthanide chelates also can be used in FRET applications with other fluorescent probes and labels (Figure 9.51). In this application, the time-resolved (TR) nature of lanthanide luminescent measurements can be combined with the ability to tune the emission characteristics through energy transfer to an organic fluor (Comley, 2006). TR-FRET, as it is called, is a powerful method to develop rapid assays with low background fluorescence and high sensitivity, which can equal the detection capability of enzyme assays (Selvin, 2000). 

In redox mediation, to have an effective electron exchange, the thermodynamic redox potentials of the enzyme and the mediator have to be accurately matched. For biocatalytic electrodes, efficient mediators must have redox potentials downhill from the redox potential of the enzyme a 50 mV difference is proposed to be optimal [1, 18]. The tuning of these potentials is a compromise between the need to have a high cell voltage and a high catalytic current. Furthermore, an obvious requirement is that the mediator must be stable in the reduced and oxidized states. Finally, for operation of a membraneless miniaturized biocatalytic fuel cell, the mediators for both the anode and the cathode must be immobilized to prevent power dissipation by solution redox reactions between them. 

In order to use the stopped-flow technique, the reaction under study must have a convenient absorbance or fluorescence that can be measured spectrophotometri-cally. Another method, called rapid quench or quench-flow, operates for enzymatic systems having no component (reactant or product) that can be spectrally monitored in real time. The quench-flow is a very finely tuned, computer-controlled machine that is designed to mix enzyme and reactants very rapidly to start the enzymatic reaction, and then quench it after a defined time. The time course of the reaction can then be analyzed by electrophoretic methods. The reaction time currently ranges from about 5 ms to several seconds. 

---