Enzymes other molecules

Kinases (Section 28 3) Enzymes that catalyze the transfer of phosphate from ATP to some other molecule Kinetically controlled reaction (Section 10 10) Reaction in which the major product is the one that is formed at the fastest rate... 

Kinases (Section 28.3) Enzymes that catalyze the transfer of phosphate from ATP to some other molecule. 

Figure 4.1. Representation of the pore structure of HZSM5, one of the most important zeolites industrially. The vertical cylinders represent one pore network, and the other cylinders an interconnecting network. The narrow pores, and their almost complete uniformity, means that only some molecules can enter. Others are excluded, and cannot react at the active sites, which are found within the structure. Thus, the reactivity of a molecule is determined by its shape and size, rather than by its electronic properties. Such a situation is almost unique, with the only exception being enzymes, where molecules must fit into the enzyme active site in order to react.

An affinity label is a molecule that contains a functionality that is chemically reactive and will therefore form a covalent bond with other molecules containing a complementary functionality. Generally, affinity labels contain electrophilic functionalities that form covalent bonds with protein nucleophiles, leading to protein alkylation or protein acylation. In some cases affinity labels interact selectively with specific amino acid side chains, and this feature of the molecule can make them useful reagents for defining the importance of certain amino acid types in enzyme function. For example, iodoacetate and A-ethyl maleimide are two compounds that selectively modify the sulfur atom of cysteine side chains. These compounds can therefore be used to test the functional importance of cysteine residues for an enzyme s activity. This topic is covered in more detail below in Section 8.4. 

The fluid portion of the blood, the plasma, accounts for 55 to 60% of total blood volume and is about 90% water. The remaining 10% contains proteins (8%) and other substances (2%) including hormones, enzymes, nutrient molecules, gases, electrolytes, and excretory products. All of these substances are dissolved in the plasma (e.g., oxygen) or are colloidal materials (dispersed solute materials that do not precipitate out, e.g., proteins). The three major plasma proteins include ... 

The Derivative, 5-(biotinamido)pentylamine, contains a 5-carbon cadaverine spacer group attached to the valeric acid side chain of biotin (Thermo Fisher). The compound can be used in a carbodi-imide reaction process to label carboxylate groups in proteins and other molecules, forming amide bond linkages (Chapter 3, Section 1). However, the main use of this biotinylation reagent is in the determination of factor XHIa or transglutaminase enzymes in plasma, cell, or tissue extracts. 

An enzyme-catalyzed process also may be used to form reactive iodine species capable of iodin-ating proteins and other molecules (Marcholonis, 1969 Morrison and Bayse, 1970). The... 

Purify the SH-labeled oligo by gel filtration on a desalting resin using 10 mM sodium phosphate, 0.15 M NaCl, 10 mM EDTA, pH 7.2. The probe now may be used to conjugate with an activated enzyme, biotin, fluorescent tag, or other molecules containing a sulfhydryl-reactive group. 

Of the large number of protein interactions that take place in cells, perhaps the vast majority may be described as transient. Most proteins that modify other molecules do so very rapidly and so interact only briefly with their substrates or binding partners (i.e., enzymes). In addition, since proteins within cells are highly compartmentalized, the affinity of most interactions doesn t have to be very great, because each potential binding partner is within short diffusion distances and the relative concentration of molecules within these small volumes is high. 

Proteins start out life as a bunch of amino acids linked together in a head-to-tail fashion—the primary sequence. The one-dimensional information contained in the primary amino acid sequence of cellular proteins is enough to guide a protein into its three-dimensional structure, to determine its specificity for interaction with other molecules, to determine its ability to function as an enzyme, and to set its stability and lifetime. 

CL reaction can be catalyzed by enzymes other than HRP (e.g., microperoxidase and catalase) and by other substances [hemoglobin, cytochrome c, Fe(III), and other metal complexes]. The presence of suitable molecules such as phenols (p-iodophenol), naphthols (l-bromo-2-naphthol), or amines (p-anisidine) increases the light production deriving from the HRP-catalyzed oxidation of luminol and produces glow-type kinetics [6, 7], The use of other enzymes, such as glucose-6-phosphate dehydrogenase [38-41], P-galactosidase [42], and xanthine oxidase [43-46], as CL labels has been reported. 

Two other commonly occurring hexoses which are usually found as components of polysaccharides or combined with other molecules in complex structures are galactose and fructose and, in a similar manner to other monosaccharides, enzymic methods are available for their measurement. An enzymic method for the measurement of fructose using hexokinase was described earlier, together with the method for mannose and glucose (Figure 9.22). 

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