Enzymes decreasing domains

A two-variable model taking into account the allosteric (i.e. cooperative) nature of the enzyme and the autocatalytic regulation exerted by the product shows the occurrence of sustained oscillations. Beyond a critical parameter value, the steady state admitted by the system becomes unstable and the system evolves toward a stable limit cycle corresponding to periodic behavior. The model accounts for most experimental data, particularly the existence of a domain of substrate injection rates producing sustained oscillations, bounded by two critical values of this control parameter, and the decrease in period observed when the substrate input rate increases [31, 45, 46]. 

The inhibitory effects of PVA can also be found in degradation studies of polycaprolactones (PCLs). These polyesters can be readily split by lipase enzymes binding to hydrophobic domains of that linear substrate. PVA/PCL films in contrast are not biodegradable by PCL-degrading microorganisms. It can be assumed that the surface properties of PCL change upon interaction with PVA in a manner that enzymatic accessibility of the hydrolysable PCL backbone motifs is decreased. 

In an attempt to separate the domains from the cores, we used limited degradation with several proteases. CBH I (65 kda) and CBH II (58 kda) under native conditions could only be cleaved successfully with papain (15). The cores (56 and 45 kda) and terminal peptides (11 and 13 kda) were isolated by affinity chromatography (15,16) and the scission points were determined unequivocally. The effect on the activity of these enzymes was quite remarkable (Fig. 7). The cores remained perfectly active towards soluble substrates such as those described above. They exhibited, however, a considerably decreased activity towards native (microcrystalline) cellulose. These effects could be attributed to the loss of the terminal peptides, which were recognized as binding domains, whose role is to raise the relative concentration of the intact enzymes on the cellulose surface. This aspect is discussed further below. The tertiary structures of the intact CBH I and its core in solution were examined by small angle X-ray scattering (SAXS) analysis (17,18). The molecular parameters derived for the core (Rj = 2.09 mm, Dmax = 6.5 nm) and for the intact CBH I (R = 4.27 nm, Dmax = 18 nm) indicated very different shapes for both enzymes. Models constructed on the basis of these SAXS measurements showed a tadpole structure for the intact enzyme and an isotropic ellipsoid for the core (Fig. 8). The extended, flexible tail part of the tadpole should thus be identified with the C-terminal peptide of CBH I. 

D197G <27> (<27> mutant of domain 2, affinity for Arg in mutant enzyme is reduced considerably, accompanied by a decrease in Vmax [21]) [21]... 

The original DEBS 1-TE cell-free system allowed several other features of polyketide chain extension to be examined by using well-known inhibitors of specific enzyme activities. Incubation of DEBS 1 -TE with the serine protease inhibitor phenylmethylsulfonyl fluoride (PMSF) resulted in a significant decrease in biosynthetic activity. This result emphasized the mechanistic similarity between the targeted TE domain and the serine protease enzymes. Addition of the fatty acid inhibitor cerulenin [38] also reduced production of the lactone, consistent with the evolutionary kinship between these two classes of enzymes. Inhibition of DEBS 1+TE by cerulenin was also reported [33],... 

As shown in figure 7.22(A), increases in membrane static order caused by supplementing the growth medium of Chinese hamster ovary cells with cholesterol led to regular decreases in the specific activity of the Na+-K+-ATPase (Sinensky et al., 1979). Presumably, the increased viscosity of the domain of lipids adjacent to the enzyme hindered the conformational changes required for ion transport, leading to reductions in enzymatic activity. 

Second, the enzyme is covalently bound to the affinity label in conditions chosen according to the enzyme in question and the chemical nature of the analogue, so as to decrease nonspecific labeling. Third, the labeled enzyme is subjected to proteolysis and the radioactive peptide(s) are isolated by HPLC. The labeled peptide(s) are then sequenced, providing information about the domains of the enzyme involved in the interaction with the substrate (or with the modulators). 

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