Enzyme glutamate racemase

Table 17-4. Production of various D-amino acids by means of four purified enzymes glutamate racemase, D-amino acid aminotransferase, glutamate dehydrogenase, and formate dehydrogenase3.

The reaction mechanism for glutamate racemase has been studied extensively. It has been proposed that the key for the racemization activity is that the two cysteine residues of the enzyme are located on both sides of the substrate bound to the active site. Thus, one cysteine residue abstracts the a-proton from the substrate, while the other detivers a proton from the opposite side of the intermediate enolate of the amino acid. In this way, the racemase catalyzes the racemization of glutamic acid via a so-called two-base mechanism (Fig. 15). 

The amino acid sequences of known hydantoin racemases present two highly conserved cysteines around positions 75 and 180 (see the asterisks in Figure 12.4). The enzymes involved in the racemization/epimerization of different substrates such as glutamate racemase and diaminopimelate epimerase present two cyste-... 

The existence of enzymes in microorganisms which catalyze the interconversion of D- and L-amino acids is of considerable interest, since the intramolecular transfer of an amino group is apparently involved. The term racemase has been proposed for such enzymes. Two racemases have been reported. Alanine racemase has been shown to be present in a large number of microorganisms and has been partially purified from extracts of S. faecalis. Glutamic acid racemase has been demonstrated in acetone powders of Lactobacillus arabinosus. Both enzymes catalyze the interconversion of the n- and l- forms of their respective substrates. Alanine racemase requires pyridoxal phosphate as coenzyme. Pyri-doxamine phosphate under the conditions employed was not active. Glutamic acid racemase was found not to be affected by the addition of pyridoxal phosphate. However, further studies with purified preparations are necessary before pyridoxal phosphate can be excluded as cofactor for the glutamic acid racemase. Examination of animal tissues under conditions favorable for the demonstration of bacterial alanine racemase failed to reveal any activity. 

Racemases are enzymes that catalyze the inversion of the chiral center by deprotonation of the C , followed by reprotonation on the opposite face of the planar carban-ionic transition-state species [13,14], In order to overcome the high energetic barrier of racemization, for example, on a-amino acids, some racemases employ pyridoxal phosphate (PLP) as a cofactor to use the resonance-stabilized amino acid complex as an electron sink because the estimated pK values for the C of amino acids are high, in the range 21-32 [14,15]. The formation of an imine PLP-substrate covalent bond makes the pK value of a-hydrogen of amino acids low. The second class of enzymes includes proline, aspartate, and glutamate racemases and diaminopimelate epimer-ase, with a cofactor-independent two-base mechanism [14],... 

PLP-dependent enzymes catalyze the following types of reactions (1) loss of the ce-hydrogen as a proton, resulting in racemization (example alanine racemase), cyclization (example aminocyclopropane carboxylate synthase), or j8-elimation/replacement (example serine dehydratase) (2) loss of the a-carboxylate as carbon dioxide (example glutamate decarboxylase) (3) removal/replacement of a group by aldol cleavage (example threonine aldolase and (4) action via ketimine intermediates (example selenocysteine lyase). 

Among the numerous enzymes that utilize pyridoxal phosphate (PLP) as cofactor, the amino acid racemases, amino acid decarboxylases (e.g., aromatic amino acids, ornithine, glutamic acid), aminotransferases (y-aminobutyrate transaminase), and a-oxamine synthases, have been the main targets in the search for fluorinated mechanism-based inhibitors. Pharmaceutical companies have played a very active role in this promising research (control of the metabolism of amino acids and neuroamines is very important at the physiological level). 

Wolosker, H., Blackshaw, S., Snyder, S. H. Serine racemase a glial enzyme synthesizing D-serine fo regulate glutamate-N-methyl-D-aspartate neurotransmission, Proc. Natl. Acad. Sci. USA 1999,... 

T Although D-amino acids do not generally occur in proteins, they do serve some special functions in the structure of bacterial cell walls and peptide antibiotics. Bacterial peptidoglycans (see Fig. 20-23) contain both D-alanine and D-glutamate. D-Amino acids arise directly from the l isomers by the action of amino acid racemases, which have pyridoxal phosphate as cofactor (see Fig. 18-6). Amino acid racemization is uniquely important to bacterial metabolism, and enzymes such as... 

Racemases are enzymes capable of interconverting D- to L-amino acids. Pyridoxal phosphate has been claimed to play a role as a cofactor in bacterial racemases for alanine, glutamic acid, and methionine, but not in others. It has also been claimed that in mammals the administration of pyridoxine facilitates the use of D-amino acids. 

Except in the case of racemases, pyridoxal phosphate enzymes are stereospecific. This has been illustrated dramatically in experiments with glutamic decarboxylase." The mechanism for decarboxylation postulated earlier involves only electron shifts about the a-carbon, while the a-hydrogen remains fixed. This mechanism was supported when it was found that the a-hydrogen does not exchange with D2O during enzymatic decarboxylation. The resulting mono-D-7-aminobutyric acid was found to... 

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