Enzymatic turnover reaction

ABSTRACT. Cyclodextrin (CD) has a hydrophobic cavity which acts like a binding site of an actual enzyme. But enzymatic turnover reaction did not occur in CD-catalyzed reactions.3-CD was modified by a histamine group to attach a reactive functional group. 3-CD-histamine accelerates the hydrolysis of p-nitrophenyl acetate. Catalytic rate constant of this reaction is close to an actual enzyme, a-chymotrypsin. Enzymatic turnover reaction is realized with this compound at around neutral pH value. 

This paper reports that we modified 3-CD by a histamine group and we realized enzymatic turnover reaction in the hydrolysis of p-nitro-phenyl acetate with this compound at around neutral pH value for the first time. 

ABSTRACT. We modified cyclodextrin (CD) by a histamine group to make a model of a-chymotrypsin. Enzymatic turnover reaction was realized with CD-histamine at around neutral pH value. Compared with amino-CD, it is ascertained that this catalytic activity of CD-histamine is caused by an imidazole group. Using several substrates in the hydrolytic reactions, it shows that CD-histamine has a structural selectivity for substrates which are structurally different to each other. 

If it is not possible to obtain an end point or complete conversion to product, substrate concentrations can be determined from the rate dependence of the enzyme reaction under conditions where [S] KM (Sect. 8.2.2). The sensitivity of the method is not as great as can be achieved by using equilibrium end point measurements, since accuracy depends on analysis of the initial rate of enzymatic turnover. 

Figure 5 Chemoenzymatic approaches for the production of novel bioactive compounds. In this example, the enzymatic buildup of the linear precursor of daptomycin by its NRPSs (DptA, DptBC, and DptD) is substituted by solid-phase synthesis (a). By using the 4 Ppan transferase Sfp and the CoA-thioester of the linear peptide, the opo-enzyme PCP-TE and be modified, and after trans-esterification cyclized by the TE domain (b). Because the resulting ho/o-enzyme cannot be modified again, this is a single turnover reaction. Another strategy uses thiophenole-esters of the linear peptides to be cyclized (c). When these compounds are used, no PCP domain is necessary. The TE domain is readily acylated, and regiospecific and stereospecific cyclization toward daptomycin or, depending on the linear peptide provided, toward variants thereof occurs. Because the enzyme is not altered in any way after product release, this setup results in a multiple turnover.

When more than one kinetic step is rate limiting in an enzymatic turnover, the reaction is said to be kinetically complex. 

Fig. 25.1. Analysis of the catalytic activity of CalB at the single-moiecuie ievei. (a) Detection of single enzymatic turnover events of the enzyme CaiB. The fluorogenic substrate BCECF-AM is hydrolyzed by CalB yielding the highly fluorescent dye BCECF. (b) Proposed reaction scheme explaining dynamic disorder. The enzyme interconverts between different conformations with the rate constants Oa, b. Each conformation hydrolyzes the substrate with its own rate constant fci. If conformational changes are slower than the catalytic reaction, a certain conformation performs several turnover cycles before it switches into another conformation. While subsequent turnovers in one conformation are correlated, the system loses its memory after a conformational change...

Fig. 25.2. Analysis of the catalytic activity and the inactivation of a-chymotrypsin at the single-molecule level, (a) Detection of single enzymatic turnover events of a-chymotrpysin. The fluorogenic substrate (suc-AAPF)2-rhodamine 110 is hydrolyzed by a-chymotrypsin, yielding the highly fluorescent dye rhodamine 110. (b) Representative intensity time trace for an individual a-chymotrypsin molecule undergoing spontaneous inactivation imder reaction conditions, (c) Inactivation trace for the intensity time transient in (b), obtained by counting the amount of turnover peaks in (b) in 10 s intervals. After approximately 1000 s, the enzyme deactivates through a transient phase with discrete active and inactive states, (d) Proposed model for the inactivation process. An initial active state is in equilibrium with an inactive state. This inactive state converts to another inactive state irreversibly whereby the corresponding active state has a lower activity than the previous one. All the transitions involved have energy barriers that can be overcome spontaneously at room temperature...

Enzymatic methylation reactions of proteins and nucleic acids in presence of SAM are of fundamental for cell division, differenci-ation and the normal genome expression. SAH which is the product of SAM demethylation possesses the properties of natural inhibitor of the majority of transmethylases8,9 and apparently may exert in vivo a direct action on SAM metabolism and physioligical functions o7 cells. The high rate of tRNA turnover which is characteristic for malignant tumors is apparently due to abnormally high activity of... 

Km for an enzymatic reaction are of significant interest in the study of cellular chemistry. From equation 13.19 we see that Vmax provides a means for determining the rate constant 2- For enzymes that follow the mechanism shown in reaction 13.15, 2 is equivalent to the enzyme s turnover number, kcat- The turnover number is the maximum number of substrate molecules converted to product by a single active site on the enzyme, per unit time. Thus, the turnover number provides a direct indication of the catalytic efficiency of an enzyme s active site. The Michaelis constant, Km, is significant because it provides an estimate of the substrate s intracellular concentration. 

If the luciferase sample solution contains a flavin-reductase, luciferase activity can be measured by the addition of FMN and NADH, instead of FMNH2. In this case, the turnover of luciferase takes place repeatedly using the FMNH2 that is enzymatically generated thus, the luminescence reaction continues until aldehyde or NADH is exhausted. A crude luciferase extracted from luminous bacteria usually contains a flavin-reductase. 

Rhin(bpy)3]3+ and its derivatives are able to reduce selectively NAD+ to 1,4-NADH in aqueous buffer.48-50 It is likely that a rhodium-hydride intermediate, e.g., [Rhni(bpy)2(H20)(H)]2+, acts as a hydride transfer agent in this catalytic process. This system has been coupled internally to the enzymatic reduction of carbonyl compounds using an alcohol dehydrogenase (HLADH) as an NADH-dependent enzyme (Scheme 4). The [Rhin(bpy)3]3+ derivative containing 2,2 -bipyridine-5-sulfonic acid as ligand gave the best results in terms of turnover number (46 turnovers for the metal catalyst, 101 for the cofactor), but was handicapped by slow reaction kinetics, with a maximum of five turnovers per day.50... 

The enzymatic activities of intercalated GOx-AM P layered nanocomposites at various pH values and temperatures were compared with the native enzyme in aqueous solution. In both cases, characteristic linear plots consistent with Michalis-Menton kinetics were obtained. The Lineweaver-Burk plots indicated that the reaction rates (Vmax) for free and intercalated GOx (3.3 and 4.0 pM min 1 respectively), were comparable, suggesting that the turnover rate at substrate saturation was only marginally influenced by entrapment between the re-assembled organoclay sheets. However, the dissociation constant (Km) associated with the activity of the enzyme was higher for intercalated GOx (6.63 mM) compared to native GOx (2.94 mM), suggesting... 

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