Entropy potentials

The Gibbs free energy definition is employed in order to express the standard state chemical potential /x° and entropy potentials and introduce the entropy potential... 

Axioms 9. The topological entropy realization while controlling the system s behaviour creates the multitude core, containing reorganization, permitting to present the entropy size H(y), entropy potential As and its adhesion catastrophe dynamic model (movement to the target attractor and the stability loss) ... 

Entropy potential of the system s condition uncertainty for every point of the isotropic line will be constant and equal As. The system s change from one condition to the other one on one isotropic line doesn t change its entropy potential. The summation of entropy trajectories for different situations of the system s interaction creates the entropy portrait. 

A general prerequisite for the existence of a stable interface between two phases is that the free energy of formation of the interface be positive were it negative or zero, fluctuations would lead to complete dispersion of one phase in another. As implied, thermodynamics constitutes an important discipline within the general subject. It is one in which surface area joins the usual extensive quantities of mass and volume and in which surface tension and surface composition join the usual intensive quantities of pressure, temperature, and bulk composition. The thermodynamic functions of free energy, enthalpy and entropy can be defined for an interface as well as for a bulk portion of matter. Chapters II and ni are based on a rich history of thermodynamic studies of the liquid interface. The phase behavior of liquid films enters in Chapter IV, and the electrical potential and charge are added as thermodynamic variables in Chapter V. 

Thus the entropy of localized adsorption can range widely, depending on whether the site is viewed as equivalent to a strong adsorption bond of negligible entropy or as a potential box plus a weak bond (see Ref. 12). In addition, estimates of AS ds should include possible surface vibrational contributions in the case of mobile adsorption, and all calculations are faced with possible contributions from a loss in rotational entropy on adsorption as well as from change in the adsorbent structure following adsorption (see Section XVI-4B). These uncertainties make it virtually impossible to affirm what the state of an adsorbed film is from entropy measurements alone for this, additional independent information about surface mobility and vibrational surface states is needed. (However, see Ref. 15 for a somewhat more optimistic conclusion.)... 

In general, it seems more reasonable to suppose that in chemisorption specific sites are involved and that therefore definite potential barriers to lateral motion should be present. The adsorption should therefore obey the statistical thermodynamics of a localized state. On the other hand, the kinetics of adsorption and of catalytic processes will depend greatly on the frequency and nature of such surface jumps as do occur. A film can be fairly mobile in this kinetic sense and yet not be expected to show any significant deviation from the configurational entropy of a localized state. 

Two subsystems a. and p, in each of which the potentials T,p, and all the p-s are unifonn, are pennitted to interact and come to equilibrium. At equilibrium all infinitesimal processes are reversible, so for the overall system (a + P), which may be regarded as isolated, the quantities conserved include not only energy, volume and numbers of moles, but also entropy, i.e. there is no entropy creation in a system at equilibrium. One now... 

This can be inserted in equation (02.2.3) to give tlie orientational distribution function, and tlius into equation (02.2.6) to deteniiine the orientational order parameters. These are deteniiined self-consistently by variation of tlie interaction strength iin equation (c2.2.7). As pointed out by de Gemies and Frost [20] it is possible to obtain tlie Maier-Saupe potential from a simple variational, maximum entropy metliod based on tlie lowest-order anisotropic distribution function consistent witli a nematic phase. 

V (the potential) is identified with the enthalpy, i.e. the number n of base pairings (contacts), and T corresponds to the entropy. At each stage in the folding process, as many as possible new favourable intramolecular interactions are fonned, while minimizing the loss of confonnational freedom (the principle of sequential minimization of entropy loss, SMEL). The entropy loss associated with loop closure is (and the rate of loop closure exp... 

Conformational Adjustments The conformations of protein and ligand in the free state may differ from those in the complex. The conformation in the complex may be different from the most stable conformation in solution, and/or a broader range of conformations may be sampled in solution than in the complex. In the former case, the required adjustment raises the energy, in the latter it lowers the entropy in either case this effect favors the dissociated state (although exceptional instances in which the flexibility increases as a result of complex formation seem possible). With current models based on two-body potentials (but not with force fields based on polarizable atoms, currently under development), separate intra-molecular energies of protein and ligand in the complex are, in fact, definable. However, it is impossible to assign separate entropies to the two parts of the complex. 

Amadei, A., Apol, M. E. F., Di Nola, A., Berendsen, H. J. C. The quasi-Gaussian entropy theory Free energy calculations based on the potential energy distribution function. J. Chem. Phys. 104 (1996) 1560-1574... 

System Potential energy components Energy-entropy components ... 

Using the coordinates of special geometries, minima, and saddle points, together with the nearby values of potential energy, you can calculate spectroscopic properties and macroscopic therm ody-riatriic and kinetic parameters, sncfi as enthalpies, entropies, and thermal rate constants. HyperChem can provide the geometries and energy values for many of these ealeulatiori s. 

The thermodynamic properties that we have considered so far, such as the internal energy, the pressure and the heat capacity are collectively known as the mechanical properties and can be routinely obtained from a Monte Carlo or molecular dynamics simulation. Other thermodynamic properties are difficult to determine accurately without resorting to special techniques. These are the so-called entropic or thermal properties the free energy, the chemical potential and the entropy itself. The difference between the mechanical emd thermal properties is that the mechanical properties are related to the derivative of the partition function whereas the thermal properties are directly related to the partition function itself. To illustrate the difference between these two classes of properties, let us consider the internal energy, U, and the Fielmholtz free energy, A. These are related to the partition function by ... 

The chemical potential, plays a vital role in both phase and chemical reaction equiUbria. However, the chemical potential exhibits certain unfortunate characteristics which discourage its use in the solution of practical problems. The Gibbs energy, and hence is defined in relation to the internal energy and entropy, both primitive quantities for which absolute values are unknown. Moreover, p approaches negative infinity when either P or x approaches 2ero. While these characteristics do not preclude the use of chemical potentials, the appHcation of equiUbrium criteria is faciUtated by the introduction of a new quantity to take the place of p but which does not exhibit its less desirable characteristics. 

Ion-Dipole Forces. Ion-dipole forces bring about solubihty resulting from the interaction of the dye ion with polar water molecules. The ions, in both dye and fiber, are therefore surrounded by bound water molecules that behave differently from the rest of the water molecules. If when the dye and fiber come together some of these bound water molecules are released, there is an increase in the entropy of the system. This lowers the free energy and chemical potential and thus acts as a driving force to dye absorption. 

---