Encoded mass encoding

Multivariate data analysis usually starts with generating a set of spectra and the corresponding chemical structures as a result of a spectrum similarity search in a spectrum database. The peak data are transformed into a set of spectral features and the chemical structures are encoded into molecular descriptors [80]. A spectral feature is a property that can be automatically computed from a mass spectrum. Typical spectral features are the peak intensity at a particular mass/charge value, or logarithmic intensity ratios. The goal of transformation of peak data into spectral features is to obtain descriptors of spectral properties that are more suitable than the original peak list data. 

The shell of all picomaviruses is built up from 60 copies each of four polypeptide chains, called VPl to VP4. These are translated from the viral RNA into a single polypeptide, which is posttranslationally processed by stepwise proteolysis involving viraily encoded enzymes. First, the polypeptide chain is cleaved into three proteins VPO (which is the precursor for VP2 and VP4), VPl and VP3. These proteins begin the assembly process. The last step of the processing cascade occurs during completion of the virion assembly the precursor protein VPO is cleaved into VP2 and VP4 by a mechanism that is probably autocatalytic but may also involve the viral RNA. VPl, VP2, and VP3 have molecular masses of around 30,000 daltons, whereas VP4 is small, being 7000 daltons, and is completely buried inside the virion. 

An electrophoresis gel of the bovine heart complex is shown in Figure 21.14. The total mass of the protein in the complex, composed of 13 subunits, is 204 kD. Subunits I through III, the largest ones, are encoded by mitochondrial DNA, synthesized in the mitochondrion, and inserted into the inner membrane from the matrix side. The smaller subunits are coded by nuclear DNA and synthesized in the cytosol. 

In forma tion Physics is a catch-all phrase that refers to attempts to found a physics on a notion of primordial information. Such attempts are based on two basic premises (1) that inf)rmation exists uid( pendently of any seniaiitics that must be used to ascribe a meaiiiiig to it, and (2) all observables found in nature are essentially data structures that the universe uses to encode information with. An electron in this view, for example, is interpreted as a data structure encoding the, eight (currently kiiowii) properties of what we call an electron (mass, charge, spin, etc.). The aim of information physics is to find the appropriate language, or dynamics, for whatever makes up this primordial information. 

A cDNA encoding apoobelin was obtained from O. longissima and sequenced (Illarionov et al., 1995). The deduced amino acid sequence of the apoobelin consists of 195 amino acid residues, with a calculated molecular mass of about 22.2 kDa, closely matching the apoproteins of other Ca2+-sensitive photoproteins such as aequorin from the jellyfish Aequorea (Inouye et al., 1985 Prasher et al., 1985) and clytin from the jellyfish Phialidium gregarium (Inouye and Tsuji, 1993). To obtain recombinant apoobelin, the cDNA encoding apoobelin was expressed in E. coli (Illarionov et al., 2000). The recombinant apoobelin produced was purified and converted into obelin by incubation with coelenterazine in the presence of molecular oxygen and 2-mercaptoethanol or dithioerythritol, as in the case of aequorin. 

The gene encoding CETP is located on the long arm of chromosome 16 (16ql2-21), spans approximately 25kbp and harbors 16 exons and 15 introns. The molecule mass of its mature protein product is 74 kDa. Major sites of CETP gene expression in humans are the... 

Neuronal NO synthase (nNOS) is constitutively expressed in neurons of the brain. Its activity is regulated by Ca2+ and calmodulin. Half-saturating L-arginine concentrations are around 2 pM. cDNAs encoding nNOS have been cloned from rat and human brain. The open reading frame of human nNOS consists of 4299 bp, corresponding to 1433 aa. This predicts a protein of 160 kDa, which is in accordance with the molecular mass of the purified protein. 

Computer algorithms facilitate identification of the open reading frames that encode a given protein by using partial sequences and peptide mass profiling to search sequence databases. 

The pecM gene encodes a protein of 297 amino acids with a calculated molecular mass of 32 kDa. The predicted PecM protein displays the characteristics of an integral membrane protein since it is largely hydrophobic, with potential trans-membrane domains. SubceUular firactionation confirmed that PecM is anchored into the bacterial inner membrane whereas PecS is... 

The cDNA clone for the neonatal rabbit fast-twitch skeletal muscle Ca -ATPase encodes for 1001 amino acids giving a product with an estimated molecular weight of 110 331 Da [8], The clone for the Ca -ATPase of slow-twitch skeletal muscle sarcoplasmic reticulum (S-Ca -ATPase) encoded for 997 amino acids with a relative molecular mass (Mr) of 109 529 kDa [42],... 

Significant additional interest in the potential role of oxytocin in labour developed from 1993, when it was reported for the first time that oxytocin, which had previously been thought to only be produced in the hypothalamus, may also be synthesised locally in the uterus as indicated by the presence of mRNA encoding for oxytocin [11]. This observation has recently been confirmed by using immunohistochemistry and mass spectrometry to confirm the presence of local oxytocin peptide in the uterus. These studies localised oxytocin to the chorionic trophoblast, decidual stroma and glandular epithelium, and demonstrated that local uterine concentrations of oxytocin increased with the onset of labour [12]. 

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