Elimination-deamination reactions

As has been mentioned previously, one is most likely to find analogies to catalytic reactions on solids with acidic and/or basic sites in noncatalytic homogeneous reactions, and therefore the application of established LFERs is safest in this field. Also the interpretation of slopes is without great difficulty and more fruitful than with other types of catalysts. The structure effects on rate have been measured most frequently on elimination reactions, that is, on dehydration of alcohols, dehydrohalogenation of alkyl halides, deamination of amines, cracking of the C—C bond, etc. Less attention has been paid to substitution, addition, and other reactions. 

Much less information is available on the deamination and related reactions over solid catalysts than on some other elimination reactions but it suffices for comprehension of the general features. 

The chemistry of C deamination has been extensively studied (6, 7). It has been suggested that at neutral pH hydroxyl ions can directly attack the C-4 position of C (Fig. 2), especially in single-stranded DNA. An alternative explanation offered is an addition-elimination reaction during which dihydrocytosine is generated as an intermediate. This reaction may involve the formation of dihydrocytosine and dihydrouracil as intermediates... 

The reaction is especially suited to the generation of optically active diazonium ions with specifically oriented counter-ions. In this respect it has possibilities which are absent for the reaction of diazoalkanes with acids and the deamination of aliphatic amines. However, in carrying out stereochemical studies, great care must be exercised to avoid spurious results, since the transient formation of a diazoalkane, either by loss of a proton from the diazonium ion or by what is probably a concerted elimination reaction of the diazoester, can lead to racemisation of the alkyl function and loss of asymmetry in the anion. Moreover, the diazoester is liable to nucleophilic displacement, for example by an acid molecule formed from already rearranged nitrosoamide, and this can lead to inverted product. 

Extensive discussion of these and many other types of elimination reactions can be found in several reviews.We will focus here on 1,2-eliminations, especially dehydrohalogenation, dehydration, dehalogenation, deamination reactions, and pyrolytic eliminations. 

The other type of reaction involves a concerted elimination process [reactions (2) through (7) in Table I]. It should be noted that there are other lyases which catalyze elimination reactions with the formation of olefins as intermediates, but these intermediates are further degraded into other nonolefin unsaturated end products. An example of this kind of reaction is the deamin-... 

Alkylaziridines can be stereospecifically deaminated to alkenes by reaction with m-chioroperbenzoic acid (70AG(E)374). The reaction and work-up are carried out in the dark to avoid isomerization of the cw-alkene, and the mechanism is thought to involve an initial oxidation to an amine oxide followed by a concerted elimination. Aziridine oxides have been generated by treating aziridines with ozone at low temperatures (71JA4082). Two... 

Thus, in contrast to benzothiepins, dibenzo compounds can be synthesized by direct acid-catalyzed elimination of water from hydroxy derivatives, or of amines from amino derivatives, at elevated temperatures due to their thermal stability. As in the case of benzothiepins, dibenzo derivatives can also be prepared by base-catalyzed elimination from the corresponding halo derivatives however, the yields are somewhat lower compared to the acid-catalyzed reactions. As a special case, an aziridine derivative was deaminated by palladium-catalyzed hydrogenation to afford the corresponding dibenzothiepin.69... 

For design of a simple manufacturing process, the thermostability of the NP enzymes is a very useful feature. Although heat treatment can be used as part of a purification protocol to isolate the enzymes from contaminating materials, the high temperature of operation itself excludes undesired enzyme-catalysed side reactions. For example, in the synthesis of 9-p-D-arabinofuranosyladenine from Ara-U and adenine, using a wet cell paste of Enterobacter aerogenes, adenine and Ara-U mainly underwent deamination at lower temperatures to form hypoxanthine and uracil respectively. At elevated temperature, deamination was completely eliminated and the rate of transarabinosylation increased. 

Cytosine can become deaminated spontaneously or by reaction with nitrous acid to form uracil. This leaves an improper base pair (G-U), which is eliminated by a base excision repair mechanism (Figure 1-2-5). Failure to repair the improper base pair can convert a normal G-C pair to an A-T pair. 

Eliminating deamination takes place in the degradation of histidine and serine. H2O is first eliminated here, yielding an unsaturated intermediate. In the case of serine, this intermediate is first rearranged into an imine (not shown), which is hydrolyzed in the second step into NH3 and pyruvate, with H2O being taken up. H2O does not therefore appear in the reaction equation. 

The lyases comprise enzyme class 4. They are enzymes cleaving C-C, C-0, C-N and other bonds by elimination, not by hydrolysis or oxidation. Lyases also catalyse addition to donble bonds. The types of reactions catalysed by lyases are decarboxylation (decarboxylase), hydration/dehydration (hydratase/dehydratase), ammonia addition/deamination (ammonia-lyase), cyanohydrin formation/cleavage (oxynitrilase),... 

Elimination to give alkenes is a major reaction-pathway in the deamination of simple amines. The relative unimportance of elimination for amino groups equatorially attached to six-membered rings has been attributed to the fact that, in the supposed transformation from diazonium ion to carbonium ion, the developing carbon p-or-... 

The reaction mechanism of amine deamination and disproportionation has been put forward by analogy with other eliminations, namely dehydration and dehydrochlorination [149,155], its characteristic feature being the cooperation of acidic and basic sites. In the deamination, /3-hydrogen and the NR2 group (R is hydrogen or alkyl) are eliminated by an E2-like mechanism on alumina, but by an El-like mechanism on silica-alumina. The nature of the acidic sites is not clear, protons from surface hydroxyls or aluminium ions are possible candidates. However, it seems... 

The reduction of adenine (267) is suggested to follow420 a similar route rather than that described in Part I, and that purine is formed after the first two-electron reduction and elimination of ammonia. A similar route is possibly followed in the deamination of 7-amino-6-phenylpyrazolo[l,5-a]-pyrimidine.351 Reduction followed by elimination is probably the most general reaction path for removing substituents bound to a heterocyclic ring through O, N, or S. 

Figure 14-7 Some PLP-dependent reactions involving elimination of a y substituent. Replacement by another y substituent or by a substituent in the (3 position is possible, as is deamination to an a-oxo acid.

When present in excess methionine is toxic and must be removed. Transamination to the corresponding 2-oxoacid (Fig. 24-16, step c) occurs in both animals and plants. Oxidative decarboxylation of this oxoacid initiates a major catabolic pathway,305 which probably involves (3 oxidation of the resulting acyl-CoA. In bacteria another catabolic reaction of methionine is y-elimination of methanethiol and deamination to 2-oxobutyrate (reaction d, Fig. 24-16 Fig. 14-7).306 Conversion to homocysteine, via the transmethylation pathway, is also a major catabolic route which is especially important because of the toxicity of excess homocysteine. A hereditary deficiency of cystathionine (3-synthase is associated with greatly elevated homocysteine concentrations in blood and urine and often disastrous early cardiovascular disease.299,307 309b About 5-7% of the general population has an increased level of homocysteine and is also at increased risk of artery disease. An adequate intake of vitamin B6 and especially of folic acid, which is needed for recycling of homocysteine to methionine, is helpful. However, if methionine is in excess it must be removed via the previously discussed transsulfuration pathway (Fig. 24-16, steps h and z ).310 The products are cysteine and 2-oxobutyrate. The latter can be oxidatively decarboxylated to propionyl-CoA and further metabolized, or it can be converted into leucine (Fig. 24-17) and cysteine may be converted to glutathione.2993... 

---