Electrostatic studies

Hunenberger, P. H. McCammon, J. A., Ewald artifacts in computer simulations of ionic solvation and ion-ion interactions a continuum electrostatics study, J. Chem. Phys. 1999,110, 1856-1872... 

The Pen Kem 3000 measurements were made by Christina Blom, a summer student from Stockholm. The 70% carbon black viscosities were measured by Douglas Seifert, a Lehigh graduate student, and several contributions to the electrostatic studies were made by Dr. Trisno Makgawinata, the current de Nora-Diamond Shamrock Fellow. 

SEALS et AL. Electrostatic Studies in Army Ammunition Plants... 

The optimal choice of preconditioner will ultimately depend on the computer architecture, in as much as some are more readily vectorizable or parallelizable. For example, the initial incomplete Cholesky decomposition methods work well on serial machines, but the forward and backward substitutions are not vectorizable. Simpler decompositions, such as diagonal scaling, run faster on machines like the Cray YMP. More complicated, vectorizable variations of the incomplete Cholesky decompositions have been developed (see, e.g., ref. 24) and are currently under investigation for their applicability to problems in biomolecular electrostatics. Studies of multigridding techniques are also very exciting. 

This is a critical review of zirconium complexation at 25°C for fluoride and hydroxide ions. A combination of solubility and solvent extraction experiments together with electrostatic studies and modelling predictions was used. 

One recent paper reported the gas phase interactions of so-called hydrophobic (nonpolar) base pairs [59b]. Interesting information concerning base pairing can be also deduced from the electrostatic studies by Gadre and coworkers [63]. 

A major advance in force measurement was the development by Tabor, Win-terton and Israelachvili of a surface force apparatus (SFA) involving crossed cylinders coated with molecularly smooth cleaved mica sheets [11, 28]. A current version of an apparatus is shown in Fig. VI-4 from Ref. 29. The separation between surfaces is measured interferometrically to a precision of 0.1 nm the surfaces are driven together with piezoelectric transducers. The combination of a stiff double-cantilever spring with one of a number of measuring leaf springs provides force resolution down to 10 dyn (10 N). Since its development, several groups have used the SFA to measure the retarded and unretarded dispersion forces, electrostatic repulsions in a variety of electrolytes, structural and solvation forces (see below), and numerous studies of polymeric and biological systems. 

In an extensive SFA study of protein receptor-ligand interactions, Leckband and co-workers [114] showed the importance of electrostatic, dispersion, steric, and hydrophobic forces in mediating the strong streptavidin-biotin interaction. Israelachvili and co-workers [66, 115] have measured the Hamaker constant for the dispersion interaction between phospholipid bilayers and find A = 7.5 1.5 X 10 erg in water. 

Protein adsorption has been studied with a variety of techniques such as ellipsome-try [107,108], ESCA [109], surface forces measurements [102], total internal reflection fluorescence (TIRE) [103,110], electron microscopy [111], and electrokinetic measurement of latex particles [112,113] and capillaries [114], The TIRE technique has recently been adapted to observe surface diffusion [106] and orientation [IIS] in adsorbed layers. These experiments point toward the significant influence of the protein-surface interaction on the adsorption characteristics [105,108,110]. A very important interaction is due to the hydrophobic interaction between parts of the protein and polymeric surfaces [18], although often electrostatic interactions are also influential [ 116]. Protein desorption can be affected by altering the pH [117] or by the introduction of a complexing agent [118]. 

A detailed study by Grieser and co-workers [169] of the forces between a gold-coated colloidal silica sphere and a gold surface reveals the preferential adsorption of citrate ions over chloride to alter the electrostatic interaction. 

Stigter and Dill [98] studied phospholipid monolayers at the n-heptane-water interface and were able to treat the second and third virial coefficients (see Eq. XV-1) in terms of electrostatic, including dipole, interactions. At higher film pressures, Pethica and co-workers [99] observed quasi-first-order phase transitions, that is, a much flatter plateau region than shown in Fig. XV-6. 

Studies of electrical interactions in proteins, polypeptides, and amino acids started over 60 years ago [1]. To a large extent, electrostatic properties of proteins are determined by the ability of certain amino acids to exchange protons with their environment and the dependence of these processes on pH. The proton occupies a special position as a promoter and iiuxliator in... 

In periodic boimdary conditions, one possible way to avoid truncation of electrostatic interaction is to apply the so-called Particle Mesh Ewald (PME) method, which follows the Ewald summation method of calculating the electrostatic energy for a number of charges [27]. It was first devised by Ewald in 1921 to study the energetics of ionic crystals [28]. PME has been widely used for highly polar or charged systems. York and Darden applied the PME method already in 1994 to simulate a crystal of the bovine pancreatic trypsin inhibitor (BPTI) by molecular dynamics [29]. 

The range of systems that have been studied by force field methods is extremely varied. Some force fields liave been developed to study just one atomic or molecular sp>ecies under a wider range of conditions. For example, the chlorine model of Rodger, Stone and TUdesley [Rodger et al 1988] can be used to study the solid, liquid and gaseous phases. This is an anisotropic site model, in which the interaction between a pair of sites on two molecules dep>ends not only upon the separation between the sites (as in an isotropic model such as the Lennard-Jones model) but also upon the orientation of the site-site vector with resp>ect to the bond vectors of the two molecules. The model includes an electrostatic component which contciins dipwle-dipole, dipole-quadrupole and quadrupole-quadrupole terms, and the van der Waals contribution is modelled using a Buckingham-like function. 

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