Double-labeling technique, analysis

Brown J P. and Perham R N. (1973) A highly sensitive method for ammo-acid analysis by a double-isotope-labeling technique using dansyl chloride Eur. ] Biochem 39, 69-73... 

One advantage of fluorescently labeled primers over dsDNA dyes is that multiplexing is possible. However, with both dsDNA dyes and labeled primers, reaction specificity depends on the specificity of the primers. Any double-stranded product that is formed will be detected, including primer-dimers. Therefore, hot start techniques, temperature discrimination by collecting real-time data at a high temperature, and melting curve analysis to confirm the desired product are useful. 

As mentioned above, the determination of atomic level structure, i.e., the backbone torsion angles for an oriented protein fiber, is possible by using both solid-state NMR method described here and specifically isotope labeling. This is basically to obtain the angle information. Another structural parameter is distance between the nuclei for atomic coordinate determination. The observation of Nuclear Overhauser Enhancements (NOEs) between hydrogen atoms is a well known technique to determine the atomic coordinates of proteins in solution [14]. In the field of solid-state NMR, REDOR (rotational echo double resonance) for detection of weak heteronuclear dipole interactions, such as those due to C and N nuclei [15, 16] or R (rotational resonance) for detection of the distance between homonuclei, are typical methods for internuclear distance determination [17,18]. The REDOR technique has been applied to structure determination of a silk fibroin model compound [19]. In general, this does not require orientation of the samples in the analysis, but selective isotope labeling between specified nuclear pairs in the samples is required which frequently becomes a problem. A review of these approaches has appeared elsewhere [16]. 

As mentioned in the Section 1, physico-chemical methodology for quantitative analysis of plant hormone focuses primarily on GC-SIM, although HPLC with selective fluorescence detection continues to be used for lAA analysis in some laboratories. Procedures, such as the 2-methylindolo-a-pyrone assay for lAA analysis [82], are now rarely utilised. With the exception of ethylene quantification [2] there is little use of non-MS-based GC detection techniques, despite the fact that selective analysis at the picogram level is achieved for ABA with an electron capture detector [83], and lAA and cytokinins with a nitrogen phosphorus detector [84,85]. The reason for the demise of these GC procedures is that the detectors are destructive and this precludes the reliable recovery of labelled internal standards for radioassay and isotopic dilution analysis. The usual compromise was to take two aliquots of the purified samples, one for GC analysis and the other for the determination of radioactivity. The accuracy of this approach is dependent upon the questionable assumption that the radioactivity in the purified sample is associated exclusively with the compound under study. In an attempt to circumvent this problem, a double standard isotope dilution procedure was devised for the quantitative analysis of lAA in which one internal standard was used to correct for losses during sample preparation and a second for GC quantification [86]. This procedure was used in several... 

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