DNA radical cation

In the direct effect of ionizing radiation on DNA, radical cations are the primary products (Chap. 12). For this reason, their reactions are of considerable interest. Obviously, photoionization (e.g., at 193 nm) and laser multi-photon excitation leads to such species (e.g., Candeias and Steenken 1992b Malone et al. 1995 Chap. 2.2). Base radical cation electron pairs have been proposed to be the first observable intermediates with a lifetime of 10 ps for Ade and four times longer for the other nucleobases (Reuther et al. 2000). Radical cations are also assumed to be intermediates in the reactions of photosensitization reactions with qui-nones, benzophenone, phthalocyanine and riboflavin (Cadet et al. 1983a Decar-roz et al. 1987 Krishna et al. 1987 Ravanat et al. 1991, 1992 Buchko et al. 1993 Douki and Cadet 1999 Ma et al. 2000). Nucleobase radical cations may be produced by electrochemical oxidation (Nishimoto et al. 1992 Hatta et al. 2001) or with strongly oxidizing radicals (for a compilation of their reduction potentials see Chap. 5.3). Rate constants are compiled in Table 10.3. 

The direct effect gives rise to a DNA radical cation (DNA,+) and an electron in addition to electronically excited DNA (DNA ) [reaction (1)]. The DNA,+ may undergo rapid hole transfer to G (GG GGG) sites (see Sect. 12.10) in competition with other reactions. 

Polyethylene (Section 6 21) A polymer of ethylene Polymer (Section 6 21) Large molecule formed by the repeti tive combination of many smaller molecules (monomers) Polymerase chain reaction (Section 28 16) A laboratory method for making multiple copies of DNA Polymerization (Section 6 21) Process by which a polymer is prepared The principal processes include free radical cationic coordination and condensation polymerization Polypeptide (Section 27 1) A polymer made up of many (more than eight to ten) amino acid residues Polypropylene (Section 6 21) A polymer of propene Polysaccharide (Sections 25 1 and 25 15) A carbohydrate that yields many monosacchande units on hydrolysis Potential energy (Section 2 18) The energy a system has ex elusive of Its kinetic energy... 

A different strategy has been applied in our work, that emphasizes the importance of DNA stability on hole transfer within double-stranded DNA. This work is based on determination of the overall yield of oxidized nucleosides that arise from the conversion of initially generated purine and pyrimidine radical cations within DNA exposed to two-photon UVC laser pulses. On the one hand, this work benefits from the excellent current knowledge of chemical reactions involving the radical cations of DNA bases, and on the other hand, from major analytical improvements that include recent availability of the powerful technique of high performance liquid chromatography-electrospray ionization-tandem mass spectrometry (CLHP-ESI-MS/MS) [16-18]. 

Relevant kinetic information on two competitive reactions of guanine radical cations within double stranded DNA, namely hydration and hole transfer to another guanine residue, has been examined [13]. Thus, the pseudoorder rate for hydration of guanine radical cations 38 has been estimated to... 

One-electron oxidation of the adenine moiety of DNA and 2 -deoxyadenos-ine (dAdo) (45) gives rise to related purine radical cations 46 that may undergo either hydration to generate 8-hydroxy-7,8-dihydroadenyl radicals (47) or deprotonation to give rise to the 6-aminyl radicals 50. The formation of 8-oxo-7,8-dihydro-2 -deoxyadenosine (8-oxodAdo) (48) and 4,6-diamino-5-formamidopyrimidine (FapyAde) (49) is likely explained in terms of oxidation and reduction of 8-hydroxy-7,8-dihydroadenyl precursor radicals 47, respectively [90]. Another modified nucleoside that was found to be generated upon type I mediated one-electron oxidation of 45 by photoexcited riboflavin and menadione is 2 -deoxyinosine (51) [29]. The latter nucleoside is likely to arise from deamination of 6-aminyl radicals (50). Overall, the yield of formation of 8-oxodAdo 48 and FapyAde 49 upon one-electron oxidation of DNA is about 10-fold-lower than that of 8-oxodGuo 44 and FapyGua 43, similar to OH radical mediated reactions [91]. 

Fig-1 Influence of the pH value on the ratio of the electron transfer, forming enol ether 8, and the water trapping, yielding products 9+10, of the enol radical cation 7 in a DNA double strand... 

The rate constants for these relatively short range hole transfer reactions generally decrease exponentially with distance. Yet, characterizing these DNA-mediated reactions with the parameter (3 is a simplification and is certainly inappropriate in cases where the Frank-Condon factor varies with distance (such as has been observed for the acridine photooxidant). Keeping these limitations in mind, however, /i-values for DNA-mediated hole transfer of -0.6-0.7 A-1 have been suggested using several different oxidant-DNA assemblies (Ap, St, Ap radical cation). 

Hole Transfer in DNA by Monitoring the Transient Absorption of Radical Cations of Organic Molecules Conjugated to DNA... 

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