Diol linker

Interestingly, the most potent analog 58 contains both the more rigid isophthalate linker and the longer propane-1,3-diol linker [65]. 

The power of the HR-MAS method for on-resin analysis has been further underscored in the development of new linkers. Without this method, only indirect analytical data after removal from the resin was available. Direct assessment of the resin-bound linker greatly facilitated the introduction of a 4,5-dibromo octane- 1,8-diol linker that was converted into an octane-1,8-diol linker cleavable by olefin metathesis at the end of the synthesis.6 The disappearance and reappearance of the olefinic protons as well as the growing oligosaccharide chain was clearly visible in the H spectrum (Fig. 8.7).7... 

L. G. Melean, W. C. Haase and P. H. Seeberger, A novel 4,5-dibromooctane-l,8-diol linker for solid-phase oligosaccharide synthesis, Tet. Lett., 2000, 41, 4329 1333. 

Another aminomethyl PS resin supported o-nitrobenzyl photolabile hnker 1.23 (80) has been employed for the synthesis of heterocycles such as thiazohdinones. Attachment to the resin is through an acid or aldehyde group and photolytic cleavage is performed in 5% dimethyl sulfoxide (DMSO)-aqueous buffer to facilitate the biological testing of the final compound. A photolabile hydroxyl linker 1.24 (81), again supported on aminomethyl PS resin, has been used to synthesize carbohydrate and peptide derivatives in SP. The easily prepared diol linker 1.25 (82) allowed the attachment of aldehydes as acetals and their photo induced release using standard conditions. 

Fully protected tumor-associated carbohydrate antigen Globo-H (50), a potential breast and prostate cancer vaccine [54, 55], was assembled by automated solid support synthesis using oct-4-ene-l,8-diol linker 49 and building blocks 51-56 (Scheme 20.15). The linker is stable to acid and base but is cleaved cleanly by olefin metathesis [56]. The octenediol linker performs best on Merrifield s PS resin, affording routinely loadings in a range of 0.1-0.3 mmol g 1. 

Reaction of chloromethyl-PS with the alkoxide of Solketal followed by hydrolysis of the aeetonide affords a diol linker 5y [252,253] to which aldehydes can be anchored in the presence of acid and a dehydrating agent. An application of this resin involved anchored bromobenzoic acids that were subjected to Suzuki couplings and products cleaved by heating in 3 M HCl-dioxane (1 1) [254],... 

The use of a p-vinylphenyl boronate as functional monomer to be covalently linked with a diol-template [2] is demonstrated in Fig. 2. Following polymerization in the presence of a cross-linker, the template has to be extracted from the polymer network. This requires breaking the covalent bond. During the application of covalently imprinted materials, the target molecules have to reform such bonds in order to be retained. Both making and breaking the bonds is at best a time-consuming process. 

The synthesis of the module is provided in Scheme 10.5 (Kushner et al. 2007). Double alkylation of ethyl acetoacetate followed by guanidine condensation afforded alkenyl-pyrimidone intermediate 24 (Kushner et al. 2007). Isocyanate 25 was coupled to pyrimidone 24 to yield 26. Upon dimerization in DCM, RCM effectively cyclized the two UPy units (Mohr et al. 1997 Week et al. 1999). A one-pot reduction and deprotection through hydrogenation using Pearlman s catalyst gave diol module 27. Finally, capping 27 with 2-isocyanatoethyl methacrylate at both ends provided the UPy sacrificial cross-linker 28, which was thoroughly characterized by H- and C-NMR, Fourier transform IR (FTIR), and mass spectrometry. 

The two most commonly used types of allyl alcohol linker are 4-hydroxycrotonic acid derivatives (Entry 1, Table 3.7) and (Z)- or ( )-2-butene-l, 4-diol derivatives (Entries 2 and 3, Table 3.7). The former are well suited for solid-phase peptide synthesis using Boc methodology, but give poor results when using the Fmoc technique, probably because of Michael addition of piperidine to the a, 3-unsaturated carbonyl compound [167]. Butene-l,4-diol derivatives, however, are tolerant to acids, bases, and weak nucleophiles, and are therefore suitable linkers for a broad range of solid-phase chemistry. 

Resin-bound aldehydes and ketones have been used as linkers for 1,2- and 1,3-diols (Entries 4-6, Table 3.33). Cleavage of acetal-based linkers is usually effected by acid-catalyzed transacetalization or by hydrolysis. 

Polystyrene-derived phenylboronic acids have been used for the attachment of diols (carbohydrates) as boronic esters [667]. Cleavage was effected by treatment with acetone/water or THF/water. This high lability towards water and alcohols severely limits the range of reactions that can be performed without premature cleavage of this linker. Arylboronic acids esterified with resin-bound diols can be oxidatively cleaved to yield phenols (Entry 8, Table 3.36). Alcohols have also been prepared by nucleophilic allylation of aldehydes with polystyrene-bound, enantiomerically enriched allyl-silanes [668], as well as by Pummerer reaction followed by reduction of resin-bound sulfoxides [669]. 

Resin-bound diols, amino alcohols, and dithiols, which reversibly form cyclic acetals with aldehydes and ketones, have been successfully used as linkers for carbonyl compounds (Entries 5-11, Table 3.40). Acetal formation on insoluble supports can be achieved by azeotropic removal of water (C6H6, TsOH, reflux [720]), whereas dithio-acetals can be prepared by acid-catalysis alone (BF3 OEt2 or TMSC1 CHCI3,0 °C, 2 h [721]). /V-Acylaminals such as R-CFI(OMe)NFI-CO-Pol have been prepared by treatment of resin-bound amides H2NCO-Pol with aldehydes in the presence of HC(OMe)3 and TFA [722],... 

The use of periodate as a cleavage agent does have advantages, however. Unlike the use of cleavable cross-linkers that contain disulfide bonds which require a reductant to break the conjugate, cleavage of diol-containing cross-links with periodate typically preserves the indigenous disulfide bonds and tertiary structure of proteins and other molecules. As a result, with most proteins bioactivity usually remains unaffected after periodate treatment. 

Figure 195 Cross-linkers containing a diol group in their cross-bridge design may be cleaved by oxidation with sodium periodate.

The oxidative introduction of carboxylic functions to nanotubes provides a large number of CNT-functional exploitations and permits covalent functionalization by the formation of amide and ester linkages and other carboxyl derivatives [24]. Bifunctional molecules (diamines, diols, etc.) are often utilized as linkers. More illustrative examples are nanotubes decorated with amino-functionalized dendrimers, nucleic acids, enzymes, etc., and the formation of bioconjugates of CNTs [96]. 

Boronates have been used in a variety of linker types either as linkers for diols [42] or as precursors for metal-mediated cleavage. A boronic acid ester, which contains an aryl iodide moiety attached by an appropriate tether, can act as an intramolecular arylation agent. A polymer-bound precursor furnished a macrocydic constrained / -tum peptide mimic via biaryl coupling, leading to cleavage [43] (Scheme 6.1.10). 

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