Dihydroxyacetone-dependent aldolases

Garrabou, X., Joglar, J., Parella, T., Bujons, J., and Clapes, R, Redesign of the phosphate binding site of L-rhamnulose-1-phosphate aldolase towards a dihydroxyacetone dependent aldolase. Adv. Synth. Catal. 2011,353 (1), 89-99. 

Figure 12 Aldol reactions catalyzed in vivo by the four stereocomplementary dihydroxyacetone-dependent aldolases.

Dihydroxyacetone Phosphate-Dependent Aldolases in the Core of Multi-Step Processes... 

The main group of aldolases from the biocatalytic point of view is, arguably, the one that uses dihydroxyacetone phosphate (DHAP) as donor. Here, we will concentrate on that appHcations in which DHAP-dependent aldolase are part of a multi-enzyme system or, alternatively, on those in which the aldolase-catalyzed reaction is key in a multi-step synthetic pathway. 

While the lyases that transfer a pyruvate unit form only a single stereogenic center, the group of dihydroxyacetone-phosphate-(DHAP, 41)-dependent aldolases create two new asymmetric centers, one each at the termini of the new C-C bond. A particular advantage for synthetic endeavors is the fact that Nature has evolved a full set of four stereochemically-complementary aldolases [189] (Scheme 6) for the retro-aldol cleavage of diastereoisomeric ketose 1-phosphates— D-fructose 1,6-bisphosphate (42 FruA), D-tagatose 1,6-bisphosphate (43 TagA), L-fuculose 1-phosphate (44 FucA), and L-rhamnulose 1-phosphate (45) aldolase (RhuA). In the direction of synthesis this formally allows the... 

Scheme 6. Stereochemically complementary set of dihydroxyacetone-phosphate-dependent aldolases...

In nature, most aldolases are rooted in the sugar metabolic cycle and accept highly functionalized substrates for the aldol reaction. Nevertheless, the scope of enzymatic aldol reactions is limited, since aldolases strictly distinguish between the acceptor and the donor, yielding almost exclusively one product, and is furthermore restricted to only a few different possible natural donors. According to the donor molecules, aldolases are grouped in dihydroxyacetone phosphate-, phosphoenolpyruvate- or pyruvate-, acetaldehyde-, and glycine-dependent aldolases [41]. 

Dihydroxyacetone phosphate (DHAP) is the donor ketone that is utilized by the DHAP-dependent aldolases. These aldolases come under the class of lyases, just like the hydroxynitrile lyases (see Section 5.2.1.1). As for the HNLs, no cofactor... 

A significant drawback of the DHAP-dependent aldolases is that DHAP cannot be replaced by dihydroxyacetone. DHAP is expensive and it is labile at neutral and basic pH values. It can be synthesized chemically, however the procedures are not very atom efficient. Therefore alternative enzyme-catalyzed approaches have been developed. A variety of them can be performed in the... 

The first group is the dihydroxyacetone phosphate (DHAP)-dependent aldolases, which use DHAP as the donor to produce 2-keto-l, 3, 4-trihydroxy motifs. The second group, the pyruvate- or phosphoenol pyruvate (PEP)-dependent aldolases, uses pyruvate to form 4-hydroxy-2-ketoacids. The third... 

Scheme 5.2. The four main groups of aldolase reactions classified by their donor substrate (1) Dihydroxyacetone phosphate (DHAP)- dependent aldolases, (2) phosphoenol pyruvate (PEP)-and pyruvate-dependent aldolases, (3) 2-deoxyribose-5-phosphate aldolase (DERA), a member of the acetaldehyde-dependent aldolases, and (4) glycine-dependent aldolases (GDA).

In vivo, six known DHAP-dependent aldolases are known to catalyze the reversible enanotioselective aldol addition of dihydroxyacetone phosphate to an acceptor aldehyde. The group is comprised of fructose 1,6-diphosphate (FDP) aldolase (EC 4.1.2.13), L-fuculose 1-phosphate (Fuc 1-P) aldolase (EC 4.1.2.17), tagatose 1,6-diphosphate (TDP) aldolase (EC 4.1.2.2), ketotetrose phosphate aldolase (EC 4.1.2.2), L-rhamnulose 1-phosphate (Rha 1-P) aldolase (EC 4.1.2.19), and phospho-5-keto-2-deoxygluconate aldolase (EC 4.1.2.29). The in vivo catalyzed reactions of this group are shown in Scheme 5.3. 

Scheme 5.3. Dihydroxyacetone phosphate (DHAP) dependent aldolases, their natural substrates and products. P = PO32. ...

In this sense, enzymatic catalysis is especially attractive for syntheses demanding highly regio- and stereoselectivity. Particularly dihydroxyacetone phosphate (DHAP) dependent aldolases are among the most suitable biocatalyst for imino-sugar synthesis due to their high stereoselectivity and chiral induction capacity [10, 12, 13]. The aldol addition of DHAP (1) to a synthetic equivalent of an... 

The four enzymes of the family of dihydroxyacetone phosphate (DHAP)-dependent aldolases fructose-1,6-bisphosphate aldolase (FruA, EC 4.1.2.13), fuculose-1-phosphate aldolase (FucA, EC 4.1.2.17), rhamnulose-1-phosphate aldolase (RhuA, EC 4.1.2.19) and tagatose-1,6-bisphosphate aldolase (TagA, EC 4.1.2.40), catalyze in vivo the reversible asymmetric addition of DHAP to d-glyceraldehyde-3-phosphate (G3P) or L-lactaldehyde, leading to four complementary diastereomers. DHAP-dependent aldolases create two new stereogenic centers, with excellent enantio and diastereoselectivity in many cases. These enzymes are quite specific for the donor substrate DHAP, but accept a wide range of aldehydes as acceptor substrates. There are only two fructose-6-phosphate aldolase isoenzymes reported to be able to use dihydroxyacetone (DHA) as donor substrate (Schiirmann and Sprenger 2001). 

Dihydroxyacetone phosphate-dependent aldolases (DHAP-aldolases) have been used widely for preparative synthesis of monosaccharides and sugar analogs (Fessner and Walter 1997 Wymer and Toone 2000 Silvestri et al. 2003). Among them, RAMA RhuA and FucA from E. coli are the most available aldolases, especially the former which was one of the first to be commercialized (Fessner and Walter 1997 Takayama et al. 1997). In many of the chemo-enzymatic strategies they are involved, the biocatalytic aldol addition to the configuration of the newly stereogenic centers is fixed by the enzyme. However, pertinent examples have been reported in which... 

A comprehensive review (260 refs.) on the synthesis of carbohydrates from noncarbohydrate sources covers the use of benzene-derived diols and products of Sharpless asymmetric oxidation as starting materials, Dodoni s thiazole and Vogel s naked sugar approaches, as well as the application of enzyme-catalysed aldol condensations. The preparation of monosaccharides by enzyme-catalysed aldol condensations is also discussed in a review on recent advances in the chemoenzymic synthesis of carbohydrates and carbohydrate mimetics, in parts of reviews on the formation of carbon-carbon bonds by enzymic asymmetric synthesis and on carbohydrate-mediated biochemical recognition processes as potential targets for drug development, as well as in connection with the introduction of three Aldol Reaction Kits that provide dihydroxyacetone phosphate-dependent aldolases (27 refs.). A further review deals with the synthesis of carbohydrates by application of the nitrile oxide 1,3-dipolar cycloaddition (13 refs.). ... 

Another labile phosphate species, which is needed as a cosubstrate for DHAP-dependent aldolase reactions, is dihydroxyacetone phosphate (Scheme 2.83, also see Sect. 2.4.1). Its chemical synthesis using phosphorus oxychloride is hampered by moderate yields. Enzymatic phosphorylation, however, gives significantly enhanced yields of a product which is sufficiently pure so that it can be used directly in solution without isolation [541, 542]. 

Scheme 2.192 Aldol reaction catalyzed by dihydroxyacetone-dependent fhictose-6-phosphate aldolase...

Deo)y-D-ribose 5-phosphate aldolases (DERAs) belong to the class of acetaldehyde-dependent aldolases. In contrast to dihydroxyacetone phosphate (DHAP) aldolases, the donor substrate specificity is not as strict, allowing for chain elongation hy two or three carbon atoms. DERA aldolases have been successfully applied to the production of nucleosides. Horinouchi... 

DHAP-Dependent Aldolases Catalyzed Aldol Addition of Dihydroxyacetone Phosphate to Cbz (or similar) Deriv ives of Amino or Azido Aldehydes... 

L. Espelt, T. Parella, I. Bujons, C. Solans, I. loglar, A. Delgado, P. Clapfe, Stereoselective aldol additions catalyzed by dihydroxyacetone phosphate dependent aldolases in emulsion systems preparation and structural characterization of linear and cyclic aminopolyols from aminoaldehydes, Chem. Eur. J. 9 (2003) 4887-4899. 

DIHYDROXYACETONE PHOSPHATE (DHAP)-DEPENDENT ALDOLASES, d-FRUCTOSE-6-PHOSPHATE ALDOLASE (FSA) AND TRANSALDOLASES... 

Sanchez-Moreno, I., Iturrate, L., Doyaguez, E. G., Martinez, J. A., Pemandez-Mayoralas, A., and Garcia-Junceda, E., Activated alpha,beta-unsaturated aldehydes as substrate of dihydroxyacetone phosphate (DHAP)-dependent aldolases in the context of a multienzyme system. Adv. Synth. Catal. 2009,351 (17), 2967-2975. 

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