Complexes proton pumping

ITowever, membrane proteins can also be distributed in nonrandom ways across the surface of a membrane. This can occur for several reasons. Some proteins must interact intimately with certain other proteins, forming multisubunit complexes that perform specific functions in the membrane. A few integral membrane proteins are known to self-associate in the membrane, forming large multimeric clusters. Bacteriorhodopsin, a light-driven proton pump protein, forms such clusters, known as purple patches, in the membranes of Halobacterium halobium (Eigure 9.9). The bacteriorhodopsin protein in these purple patches forms highly ordered, two-dimensional crystals. 

Friedrich, T., Steinmuller, K., Weiss, H. (1995). The proton-pumping respiratory complex I of bacteria and mitochondria and its homologue in chloroplasts. (Review). FEBS Letters 367, 107-111. 

Each of the respiratory chain complexes I, III, and IV (Figures 12-7 and 12-8) acts as a proton pump. The inner membrane is impermeable to ions in general but particularly to protons, which accumulate outside the membrane, creating an electrochemical potential difference across the membrane (A iH )-This consists of a chemical potential (difference in pH) and an electrical potential. 

Transport proteins (channels) for chloride and zinc Vacuolar proton pump Components of synaptic vesicles to mediate the chloride flux for glutamate uptake and zinc uptake in most synaptic vesicles. Zinc transporter is homologous to endosomal and plasma membrane zinc transporters chloride transporters remain to be identified. Protein complex of more than 12 subunits. Constitutes the largest component of synaptic vesicles and establishes... 

Complex II (which is not shown in the figure) contains succinate dehydrogenase, the FAD-dependent Krebs cycle enzyme and, like Complex I, transfers its electrons through iron-sulfur centres and a 6-type cytochrome (more of these haem iron proteins will be discussed in Chapter 13) to CoQ. However, here AEI is only 0.085 V, corresponding to AG° of —16.4 kJ/mol, which is not sufficient to allow proton pumping. 

We now turn our attention to how the gradient of protons pumped by Complexes I, III and IV across the inner mitochondrial membrane into the intermembrane space, together with the associated membrane potential, is used to turn the molecular rotor that ensures... 

In all protein-protein complexes studied to date in which cytochrome c has been a partner, it has been shown that the ET rates depend strongly on the reaction driving force. It follows that variations in the reorganization energy could control ET rates in these cases [12]. In redox enzymes with two or more active centers, ET between two centers could be turned on by lowering X at roughly constant — AG [1]. Indeed, a proposal has been advanced that this type of mechanism would be an efficient way to gate the electron flow in a redox-linked proton pump such as cytochrome oxidase [75]. 

Albracht SPJ, Hedderich R. 2000. Learning from hydrogenases location of a proton pump and of a second FMN in bovine NADH ubiquinone oxidoreductase (complex I) FEBS Lett 485 1-6. 

The oxidation/reduction of redox cofactors in biological systems is often coupled to proton binding/release either at the cofactor itself or at local amino acid residues, which provides the basic mechanochem-ical part of a proton pump such as that foimd in cytochrome c oxidase (95). Despite a thermodynamic cycle that provides that coupling of protonation of amino acids to the reduction process will result in a 60 mV/pH decrease unit in the reduction potential per proton boimd between the pAa values in the Fe(III) and Fe(II) states, the essential pumping of protons in the respiratory complexes has yet to be localized within their three-dimensional structures. 

Proton gradients can be built up in various ways. A very unusual type is represented by bacteriorhodopsin (1), a light-driven proton pump that various bacteria use to produce energy. As with rhodopsin in the eye, the light-sensitive component used here is covalently bound retinal (see p. 358). In photosynthesis (see p. 130), reduced plastoquinone (QH2) transports protons, as well as electrons, through the membrane (Q cycle, 2). The formation of the proton gradient by the respiratory chain is also coupled to redox processes (see p. 140). In complex III, a Q,cycle is responsible for proton translocation (not shown). In cytochrome c oxidase (complex IV, 3), trans-... 

In chemical terms the photoinduced electron transfer results in transfer of an electron across the photosynthetic membrane in a complex sequence that involves several donor-acceptor molecules. Finally, a quinone acceptor is reduced to a semiquinone and subsequently to a hydroquinone. This process is accompanied by the uptake of two protons from the cytoplasma. The hydroquinone then migrates to a cytochrome be complex, a proton pump, where the hydroquinone is reoxidized and a proton gradient is established via transmembrane proton translocation. Finally, an ATP synthase utilizes the proton gradient to generate chemical energy. Due to the function of tetrapyrrole-based pigments as electron donors and quinones as electron acceptors, most biomimetic systems utilize some... 

Complex IV Cytochrome c to 02 In the final step of the respiratory chain, Complex IV, also called cytochrome oxidase, carries electrons from cytochrome c to molecular oxygen, reducing it to H20. Complex IV is a large enzyme (13 subunits Mr 204,000) of the inner mitochondrial membrane. Bacteria contain a form that is much simpler, with only three or four subunits, but still capable of catalyzing both electron transfer and proton pumping. Comparison of the mitochondrial and bacterial complexes suggests that three subunits are critical to the function (Fig. 19-13). 

For reasons discussed in Chapter 20, plants must carry out this reaction even when they do not need NADH for ATP production. To regenerate NAD+ from unneeded NADH, plant mitochondria transfer electrons from NADH directly to ubiquinone and from ubiquinone directly to 02, bypassing Complexes III and IV and their proton pumps. In this process the energy in NADH is dissipated as heat, which can sometimes be of value to the plant (Box 19-1). Unlike cytochrome oxidase (Complex IV), the alternative QH2 oxidase is not inhibited by cyanide. Cyanide-resistant NADH oxidation is therefore the hallmark of this unique plant electron-transfer pathway. 

Cyanobacteria can synthesize ATP by oxidative phosphorylation or by photophosphorylation, although they have neither mitochondria nor chloroplasts. The enzymatic machinery for both processes is in a highly convoluted plasma membrane (see Fig. 1-6). Two protein components function in both processes (Fig. 19-55). The proton-pumping cytochrome b6f complex carries electrons from plastoquinone to cytochrome c6 in photosynthesis, and also carries electrons from ubiquinone to cytochrome c6 in oxidative phosphorylation—the role played by cytochrome bct in mitochondria. Cytochrome c6, homologous to mitochondrial cytochrome c, carries electrons from Complex III to Complex IV in cyanobacteria it can also carry electrons from the cytochrome b f complex to PSI—a role performed in plants by plastocyanin. We therefore see the functional homology between the cyanobacterial cytochrome b f complex and the mitochondrial cytochrome bc1 complex, and between cyanobacterial cytochrome c6 and plant plastocyanin. 

Because the four protons produced in this reaction are released into the thylakoid lumen, the oxygen-evolving complex acts as a proton pump, driven by electron transfer. The sum of Equations 19-12 through 19-15 is... 

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