Cluster excision

John D. Corbett once said There are many wonders still to be discovered [4]. This certainly holds generally for all the different areas and niches of early transition cluster chemistry and especially for the mixed-hahde systems. The results reported above so far cover a very Hmited selection of only chloride/iodide systems and basically boron as the interstitial. Because of the very sensitive dependence of the stable stracture built in the soHd-state reaction type on parameters like optimal bonding electron counts, number of cations present, size and type of cations (bonding requirements for the cations), metal/halide ratio, and type of halide, a much larger mixed-hahde cluster chemistry can be expected. Further developments, also in mixed-hahde systems, can be expected by using solution chemistry of molecular clusters, excised from solid-state precursors. 

Molybdenum-based high-temperature syntheses from the starting elements, with high yields, resulted [81] in chemically inert coordination polymers in which the desired cluster units are connected by bridging ligands into 1-D, 2-D, and 3-D frameworks. Sokolov and coworkers introduced an alternative method of cluster excision from the solids based on the mechanochemical reaction of cluster coordination polymers with an appropriate ligand. TG helped the characterization of these cluster oxalate complexes. 

This approach has been fashioned in the pursuit of molecular rhenium chalcogenide clusters whose structures have not been accessible by conventional self-assembly techniques. The method, which has been termed cluster excision, involves the addition of a suitable ligand to the nonmolecular solid, such that the vacant sites on the metal centers will be occupied upon cleavage of the bridging interactions. Ligands that have been utilized in this approach include Cl and CN , affording molecular rhenium sulfide and selenide clusters (Equation (21)). This method also allows access to previously known structures under milder synthetic conditions ... 

In contrast to the synthetic accessibility of the above complexes using solution approaches, the synthesis of octahedral rhenium chalcogenide clusters requires the implementation of high temperature solid-state reactions, or the conversion of cluster-containing solids into soluble molecular species by the methods of cluster excision or dimensional reduction (see Section 7.2.2.1.8). While cluster excision has produced the mixed sulfide(selenide)-chloride clusters [Re6E4+ Clio 2 ] " ( = 1-3), the latter approach has led to the isolation of complexes with rhenium-chalcogenide cores [RegEgXg] - (E = S, Se X = C1, Br, I). 

The exploratory solid-state synthetic work of John Corbett has illustrated the diversity, beauty and richness of this chemistry with a large variety of new phases and structures [1-3]. John Corbett was also the pioneer who recognized the potential of these cluster polymers in the development of a versatile solution chemistry [4]. Once the cluster unit has been identified in the solid state, the excision of this motif appears as the most rational method for accessing these cluster complexes in solution [5]. 

An unprecedented stereoselective procedure to obtain enantiomerically pure transition cluster M3Q4 complexes consists of the direct excision of the M3Q7X4 n polymers using chiral diphosphanes, namely (+)-l,2-bis[(2J ,5R)-2,5-(dimethylphospholano)]ethane [(R,R)-Me-BPE] and its respective enantiomer [(S,S)-Me-BPE] to afford the trinuclear complexes (P)-[Mo3S4Cl3(J ,J -Me-BPE)3] and (Af)-[Mo3S4Cl3(S,S-Me-BPE)3] , respectively [30]. The structures of both enantiomers are shown in Fig. 7.3. The symbols (P) and (M) refer to the rotation of the chlorine atoms around the C3 axis, with the capping sulfur pointing towards the viewer. 

Simple experimental approaches to this problem recently started postulate that the repair of clustered DNA damage leads to conversion of nonlethal lesions, e.g., dihydrothymine, or mutagenic lesions, such as 8-OxoGuanine, into lethal double strand breaks. These early experiments have studied kinetics and influence of excision of base lesion within clustered DNA damage by E. coli and nuclear extracts [27,123-129]. 

The structural relationship between the molecular and solid-state compounds has been a hot issue in inorganic chemistry for some time (25-27). The extrusion (or excision) from preformed solid-state cluster compounds is one of the major synthetic methods of the preparation of cluster complexes (26). Use of cluster complexes as precursors to solid-state cluster compounds is the reverse reaction of excision. Both reactions utilize the structural similarity of the metal cluster units. The basic cluster units of polyhedra (deltahedra) or raft structures are triangles, and both molecular and solid-state clusters with octahedral, tetrahedral, and rhomboidal cores have been reported. Similarity of other properties such as electronic structures based on the cluster units is also important. The present review is concerned with the syntheses and structures of the cluster complexes of the group 6 metals and with their relationships to solid-state chemistry. 

Nearly all modifications that have been detected on the model level (Chap. 10) are also found in free-radical damaged DNA. Obviously the DNA-bound lesions are much more difficult to detect, and there is an ongoing discussion as to the best procedure of their excision (Chap. 13.2 for a review on the excision and repair of base lesions in vivo see Wallace, 2002). Mechanistic details concerning the formation of the base lesions have been discussed in Chapters 10 and 11, and only some additional information will be given below and in the section on clustered lesions where the phenomenon of tandem lesions, two damaged bases that are formed side by side, is dealt with. The yields of damaged bases formed upon y-irradiation in aqueous solution, as has been determined by the GC-MS/SIM technique, are compiled in Table 12.5. 

David-Cordonnier M-H, Laval J, O Neill P (2000) Clustered DNA damage, influence on damage excision by XRS5 nuclear extracts and Escherichia coli Nth and Fpg proteins. J Biol Chem 275 11866-11873... 

David-Cordonnier M-H, Boiteux S, O Neill P (2001a) Efficiency of excision of 8-oxo-guanine within DNA clustered damage by XRS5 nuclear extracts and purified human OGGI protein. Biochemistry 40 11881-11818... 

As mentioned briefly above, the enzymatic excision of damaged nucleobases may cause some problems. A case in point is the action of nuclease PI. While a single 8-oxo-G lesion is excised as the damaged nucleoside, the clustered 8-oxo-G/Fo lesion is only obtained as modified dinucleotide (Maccubbin et al. 1992). Another example is the hydrolysis of dG pC which severely inhibits the action of bovine spleen phosphodiesterase, while HMUrapA shows only very little inhibition (Maccubbin et al. 1991). Enzymatic hydrolysis of DNA is, in fact, the recommended method for the determination of HMUra (Teebor et al. 1984 Frenkel et al. 1985). It is recalled that mammalian cells cope with this DNA lesion with the help of a hydroxymethyluracil glycosylase (Hollstein et al. 1984). 

Excision reactions tend to be low yielding, and can often benefit from the use of Soxhlet extraction techniques. Only a very few excision reactions have beenreported to succeed in dismantling a 3D cluster-containing framework (143-145). 

Excision reactions are sometimes accompanied by redox chemistry. For example, dissolution of the 2D solid Na4Zr6BeCli6 in acetonitrile in the presence of an alkylammonium chloride salt results in simultaneous reduction of the cluster cores (144). Here, the oxidation product remains unidentified, but is presumably the solvent itself. As a means of preventing such redox activity, Hughbanks (6) developed the use of some room temperature molten salts as excision media, specifically with application to centered zirconium-halide cluster phases. A number of these solids have been shown to dissolve in l-ethyl-2-methylimidazolium chloride-aluminum chloride ionic liquids, providing an efficient route to molecular clusters with a full compliments of terminal chloride ligands. Such molten salts are also well suited for electrochemical studies. 

For the beautiful tetracapped octahedral Os cluster, [OsioC(CO)24]2- with an interstitial C atom in the octahedral core, shown in Figure 3.10, the predicted eve count is 14(6) + 2 + 4(12) = 134, which agrees with that of the observed stoichiometry. It s a little bit harder to count the sep but give it a try. Each tetrahedral cap consists of an Os(CO)3 fragment and the other six fragments are Os(CO)2 so we have (4x2 + 6x0 + 4 + 2)/2 = 7 appropriate for an octahedron. If you look ahead in Chapter 6 (Exercise 6.1), you will find that this trigonal bipyramidal ten-atom core can be excised from a cubic close-packed metal lattice (ABC layers). [OsioC(CO)24]2- can be considered a nano-sized metal particle stabilized by the ligands in the same manner as Ni atoms are stabilized when removed from Ni metal by CO as Ni(CO)4 in the Mond process. 

The six atoms that define an octahedral hole, when excised from the lattice, constitute an octahedral cluster. Further, ahexa-capped octahedral cluster, generated by the fusion of six tetrahedral clusters, three up and three down, can also be cut... 

Clusters in which intercluster linkages are minimized can be excised. For example, by mixing l-ethyl-3-methylimidazolium chloride (ImCl) with A1C13 and (Zr6Fe)Br14 in a melt reaction, the compound (Im)4[(Zr6Fe)Clig] can be isolated.50... 

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