Azurin coordination

Fig. 5.8. Three-dimensional structure of P. aeruginosa azurin. Coordinates from ref. [80] and Brookhaven Data Bank. Graphic representation by Molscript [66], The copper atom is indicated by the large sphere at the top, the disulphide group by the two smaller, lightly...

D.R. McMillin, Purdue University In addition to the charge effects discussed by Professor Sykes, I would like to add that structural effects may help determine electron transfer reactions between biological partners. A case in point is the reaction between cytochrome C551 and azurin where, in order to explain the observed kinetics, reactive and unreactive forms of azurin have been proposed to exist in solution (JL). The two forms differ with respect to the state of protonation of histidine-35 and, it is supposed, with respect to conformation as well. In fact, the lH nmr spectra shown in the Figure provide direct evidence that the nickel(II) derivative of azurin does exist in two different conformations, which interconvert slowly on the nmr time-scale, depending on the state of protonation of the His35 residue (.2) As pointed out by Silvestrini et al., such effects could play a role in coordinating the flow of electrons and protons to the terminal acceptor in vivo. 

Finally, we examine azurin, a blue protein (FW = 14 000) devoted to bacterial electron transport, the copper centre of which has a penta-coordinate trigonal bipyramidal geometry, at variance with all the other cupredoxins, Figure 39.73... 

Simple thermodynamic considerations state that the reduction process is favoured (i.e. more positive cu(ii)/cu(p potential values are obtained) if the electron transfer is exothermic (AH° negative) and if the molecular disorder increases (AS° positive). It is therefore evident that the positive potential value for the reduction of azurin (as well as that of the most blue copper proteins) is favoured by the enthalpic factor. This means that the metal-to-ligand interactions inside the first coordination sphere (which favour the stability of the reduced form over the oxidized form) prevail over the metal complex-to-solvent interactions inside the second... 

The His35, with coordinated His46 in close proximity, has frequently been suggested as a site for electron transfer reactivity of azurin. Two processes have been detected in a temperature-jump study on the equihbration of azurin with cytochrome C551, its physiological partner [57]. The fast process is assigned to electron transfer, and the slower process to a conversion between inactive and active forms of reduced azurin. It has been concluded that the active form is protonated. A second H-bonded form of His35 is believed to result from the protonation [2]. 

Mavicyanin (Mj = 18,000) is obtained from green squash (Cucurbito pepo medullosa), where it occurs alongside ascorbate oxidase [64]. It has a peak at 600 nm (e 5000 M cm and reduction potential of 285 mV. Further studies on this and the mung bean and rice bran proteins [65, 66] would be of interest. All the above type 1 Cu proteins have an intense blue color and characteristic narrow hyperfine EPR spectrum for the Cu(II) state. Table 3 summarizes the properties of those most studied. There is some variation in reduction potential and position of the main visible absorbance peak. In the case of azurin, for example, the latter is shifted from 597 to 625 nm. Stellacyanin has no methionine and the identity of the fourth ligand is therefore different [75]. The possibility that this is the 0(amide) of Gln97 has been suggested [63b]. It now seems unlikely that the disulfide is involved in coordination. Stellacyanin has 107 amino acids, with carbohydrate attached at three points giving a 40% contribution to the M, of 20,000 [75]. 

As an example on the relationship between proton relaxivity, electron relaxation and coordination environment, we report the case of azurin and its mutants. The relaxivity of wild type azurin is very low (Fig. 6) due to a solvent-protected copper site, the closest water being found at a distance of more than 5 A from the copper ion. The fit, performed with the Florence NMRD program, able to take into account the presence of hyperfine coupling with the metal nucleus (Ay = 62 x 0 cm , see Section II.B) indicates Tie values of 8 X 10 s. Although the metal site in azurin is relatively inaccessible, several mutations of the copper ligands open it up to the solvent. The H NMRD profiles indicate the presence of water coordination for the... 

Fig. 2. Copper site in azurin. In this and subsequent figures the following conventions have been used, (a) The copper site is generally an enlargement of (b). The copper site is a dotted sphere, the ligand residues are represented by bonds connecting atoms in the side chain, and, where possible, the atoms bonded to the copper atom are identified by atom type. Ribbons represent portions of the backbone structure near the copper. In (b) of each figure, the main-chain polypeptide is represented by a ribbon fit to the main-chain coordinates, and the amino and carboxy termini are indicated by N and C, respectively, (c) A schematic version drawn from (b). Solid arrows represent main-chain regions participating in the /3 sheet roughly above the plane of the paper, while dotted or light arrows are the...

Blue copper proteins, 36 323, 377-378, see also Azurin Plastocyanin active site protonations, 36 396-398 charge, 36 398-401 classification, 36 378-379 comparison with rubredoxin, 36 404 coordinated amino acid spacing, 36 399 cucumber basic protein, 36 390 electron transfer routes, 36 403-404 electron transport, 36 378 EXAFS studies, 36 390-391 functional role, 36 382-383 occurrence, 36 379-382 properties, 36 380 pseudoazurin, 36 389-390 reduction potentials, 36 393-396 self-exchange rate constants, 36 401-403 UV-VIS spectra, 36 391-393 Blue species... 

A qualitative understanding of these features was provided in 1978 when the crystal structure of poplar leaf plastocyanin and Pseudomonas aeruginosa azurin appear-ed 2,73) proteins appears to be coordinated by two histidines with... 

Blue copper proteins in their oxidized form contain a Cu2+ ion in the active site. The copper atom has a rather unusual tetra-hedral/trigonal pyramidal coordination formed by two histidine residues, a cysteine and a methionine residue. One of the models of plastocyanin used in our computational studies (160) is pictured in Fig. 7. Among the four proteins, the active sites differ in the distance of the sulfur atoms from the Cu center and the distortion from an approximately trigonal pyramidal to a more tetrahedral structure in the order azurin, plastocyanin, and NiR. This unusual geometrical arrangement of the active site leads to it having a number of novel electronic properties (26). 

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