Two-step binding model

Together these results suggest a two-step activation model in which ligand first binds to the high affinity sequence on the receptor N-terminus thereby tethering it to the receptor. Subsequently, in an intramolecular docking event, the tethered ligand docks to a secondary site on the... 

The current understanding on activation of Tec kinases fits into a two-step model. In the first step an intramolecular interaction between the SH3 domain and aproline-rich region in the TH domain is disrupted by binding ofthe PH domain to phosphoinositides, G protein subunits, or the FERM domain of Fak. These interactions lead to conformational changes of Tec and translocation to the cytoplasmic membrane where, in a second step, Src kinases phosphorylate a conserved tyrosine residue in the catalytic domain thereby increasing Tec kinase activity. Autophosphorylation of a tyrosine residue in the SH3 domain further prevents the inhibitory intramolecular interaction resulting in a robust Tec kinase activation. 

In this model, OBPs participate in the selective transport of pheromone and other semiochemicals to their olfactory receptors. The selectivity of the system is likely to be achieved by layers of filters [ 16], i.e., by the participation of compartmentalized OBPs and olfactory receptors. It seems that OBPs transport only a subset of compounds that reach the pore tubules. Some of these compounds may not bind to the receptors compartmentalized in the particular sensilla. The odorant receptors, on the other hand, are activated by a subset of compounds, as indicated by studies in Drosophila, showing that a single OR is activated by multiple compounds [66]. If some potential receptor ligand reaches the pore tubules but are not transported by OBPs, receptor firing is prevented because the receptors are protected by the sensillar lymph. In other words, even if neither OBPs nor odorant receptors (ORs) are extremely specific, the detectors (olfactory system) can show remarkable selectivity if they function in a two-step filter. 

Sluyters and coworkers [38] have studied the catalytic influence of adsorbed iodide ions on the electroreduction of Zn(II) on the mercury electrode. It was found that the charge-transfer process proceeds through two consecutive one-electron transfer steps. Logarithms of the rate constant of both steps are linearly dependent on the amount of adsorbed iodides (Fig. 2). The experimental data were compared with the existing theoretical anion-binding model used to describe the observed results. 

Also the reaction pathways of Sarin decomposition catalyzed by selected forms of MgO were investigated [38]. In the case of the decomposition on the nonhydroxylated MgO surface, the removal of fluorine from Sarin was modeled. Fluorine was transferred from Sarin into binding distance with the Mg atom of the MgO surface (Fig. 13.9). It was revealed that such a structure provides a reliable model for the reaction mechanism. A two-step reaction mechanism was assumed. In the first step, Sarin creates a stable adsorbed complex with MgO through three chemical bonds with the MgO surface (the Al-GB model). It is expected that the transfer of the fluorine atom to the surface of MgO is accompanied by a change in the conformation of Sarin. In the second step, the bond between P and F is broken (the Al(t)-GB model) the fluorine atom is transferred to the Mg atom of the surface and the remaining part of Sarin adopts the most energetically favorable conformation (the Al(f)-GB model). 

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