Tricarboxylic acids pathway

During the biological aging of sherry, the concentration of ethanol decreases because of its consumption by flor yeast. Its respiration via the tricarboxylic acid pathway (Suarez-Lepez and Inigo-Leal, 2004) provides the main source of carbon and energy. Acetaldehyde is the main organic byproduct of ethanol metabolism, but other volatile compounds, notably acetic acid, butanediol, diacetyl, and acetoin, can also be formed. In addition,... 

MCM plays an essential role in propionate metabolism. Propionate and propionyl-CoA are intermediates in the catabolism of leucine and isoleucine and are further metabolized by carboxylation of propionyl-CoA to methylmalonyl-CoA. Isomerization to succinyl-CoA feeds the carbon chain into the tricarboxylic acid pathway of oxidative metabolism. For this reason, MCM is an important enzyme in bacterial and mammalian metabolism. It is one of the two vitamin Bj2-dependent enzymes known to be important in human metabolism. 

The 4-phosphopantetheine group of CoA is also utilized (for essentially the same purposes) in acyl carrier proteins (ACPs) involved in fatty acid biosynthesis (see Chapter 25). In acyl carrier proteins, the 4-phosphopantetheine is covalently linked to a serine hydroxyl group. Pantothenic acid is an essential factor for the metabolism of fat, protein, and carbohydrates in the tricarboxylic acid cycle and other pathways. In view of its universal importance in metabolism, it is surprising that pantothenic acid deficiencies are not a more serious problem in humans, but this vitamin is abundant in almost all foods, so that deficiencies are rarely observed. 

In 1937 Krebs found that citrate could be formed in muscle suspensions if oxaloacetate and either pyruvate or acetate were added. He saw that he now had a cycle, not a simple pathway, and that addition of any of the intermediates could generate all of the others. The existence of a cycle, together with the entry of pyruvate into the cycle in the synthesis of citrate, provided a clear explanation for the accelerating properties of succinate, fumarate, and malate. If all these intermediates led to oxaloacetate, which combined with pyruvate from glycolysis, they could stimulate the oxidation of many substances besides themselves. (Kreb s conceptual leap to a cycle was not his first. Together with medical student Kurt Henseleit, he had already elucidated the details of the urea cycle in 1932.) The complete tricarboxylic acid (Krebs) cycle, as it is now understood, is shown in Figure 20.4. 

The metabolic pathway for bacterial sugar fermentation proceeds through the Embden-Meyerhof-Paranas (EMP) pathway. The pathway involves many catalysed enzyme reactions which start with glucose, a six-carbon carbohydrate, and end with two moles of three carbon intermediates, pyruvate. The end pyruvate may go to lactate or be converted to acetyl CoA for the tricarboxylic acid (TCA) cycle. The fermentation pathways from pyruvate and the resulting end products are shown in Figures 9.7 and 9.8. 

The citrate cycle is the final common pathway for the oxidation of acetyl-CoA derived from the metabolism of pyruvate, fatty acids, ketone bodies, and amino acids (Krebs, 1943 Greville, 1968). This is sometimes known as the Krebs or tricarboxylic acid cycle. Acetyl-CoA combines with oxaloacetate to form citrate which then undergoes a series of reactions involving the loss of two molecules of CO2 and four dehydrogenation steps. These reactions complete the cycle by regenerating oxaloacetate which can react with another molecule of acetyl-CoA (Figure 4). 

Purple sulfur bacteria fix carbon dioxide using the Calvin-Benson cycle, but green sulfur bacteria use a completely different pathway, the reverse tricarboxylic acid cycle. Other photosynthetic bacteria use still different pathways for CO2 fixation (Perry and Staley, 1997). 

Oxidation may take place by a modified tricarboxylic acid cycle in which the production of CO2 is coupled to the synthesis of NADPH and reduced ferredoxin, and the dehydrogenation of succinate to fumarate is coupled to the synthesis of reduced menaquinone. This pathway is used, for example, by Desulfuromonas acetoxidans and in modified form by... 

Plant metabolism can be separated into primary pathways that are found in all cells and deal with manipulating a uniform group of basic compounds, and secondary pathways that occur in specialized cells and produce a wide variety of unique compounds. The primary pathways deal with the metabolism of carbohydrates, lipids, proteins, and nucleic acids and act through the many-step reactions of glycolysis, the tricarboxylic acid cycle, the pentose phosphate shunt, and lipid, protein, and nucleic acid biosynthesis. In contrast, the secondary metabolites (e.g., terpenes, alkaloids, phenylpropanoids, lignin, flavonoids, coumarins, and related compounds) are produced by the shikimic, malonic, and mevalonic acid pathways, and the methylerythritol phosphate pathway (Fig. 3.1). This chapter concentrates on the synthesis and metabolism of phenolic compounds and on how the activities of these pathways and the compounds produced affect product quality. 

We will return to an overview of anabolic pathways shortly, but first we want to examine in more detail the two important catabolic pathways, glycolysis and the tricarboxylic acid cycle. 

Figure 5.15 The tricarboxylic acid cycle plays a central role in supplying intermediates for biosynthetic pathways as well as receiving intermediates from catabolic pathways. (From Voet and Voet, 2004. Reproduced with permission from John Wiley Sons., Inc.)...

Nevertheless, using GC-based technologies, the quantification of several important intermediates of central metabolism, especially phosphorylated intermediates, is not very reliable, presumably because these compounds and their derivatives are not thermostable. For an analysis of these groups of metabolites, an LC-MS (liquid chromatography or HPLC coupled to MS) is more suitable, because it eliminates the need for volatility and thermostability and thereby eliminates the need for derivatization. Using a triple quadrupole MS, most of the intermediates in glycolysis, in the pentose phosphate pathway, and in the tricarboxylic acid cycle were measured in E. coli [214]. 

B. Luo, K. Groenke, R. Takors, C. Wandrey, and M. Oldiges, Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography mass spectrometry. J. Chromatogr. A 1147, 153 164 (2007). 

Pathways can be illustrated in a metabolic map as linear, branched or cyclic processes (Figure 1.3) and are often compartmentalized within particular subcellular location glycolysis in the cytosol and the Krebs tricarboxylic acid (TCA) cycle in... 

Glycolysis and the tricarboxylic acid (TCA) cycle are used as model pathways to illustrate the processes. 

Oxalic acid, tartaric acid, and other hydroxylated di- and tricarboxylic acids are decarboxylated to varying extents by radical pathways when reacted at 25 °C with Ce(IV) in 1 M sulfuric acid solution." ... 

T) Pentose phosphate pathway Gluconeogenesis Glycolysis P-Oxidation (5) Fatty acid biosynthesis Tricarboxylic acid cycle (7) Urea cycle... 

Coenzyme availability can also often have a limiting effect (5). If the coenzyme is regenerated by a second, independent metabolic pathway, the speed of the second pathway can limit that of the first one. For example, glycolysis and the tricarboxylic acid cycle are mainly regulated by the availability of NAD" (see p. 146). Since NAD is regenerated by the respiratory chain, the latter indirectly controls the breakdown of glucose and fatty acids (respiratory control, see p. 144). 

The tricarboxylic acid cycle (TCA cycle, also known as the citric acid cycle or Krebs cycle) is a cyclic metabolic pathway in the mitochondrial matrix (see p. 210). in eight steps, it oxidizes acetyl residues (CH3-CO-) to carbon dioxide (CO2). The reducing equivalents obtained in this process are transferred to NAD"" or ubiquinone, and from there to the respiratory chain (see p. 140). Additional metabolic functions of the cycle are discussed on p. 138. 

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