Transition, intramolecular

For copolyamides containing tere-phthalic units, in the high temperature part of the transition, intramolecular cooperativity of phenyl ring jr-flips with adjacent amide groups exists, whatever the xTy -y and MTy. y series considered. 

In the NMR conformational study of folded polypeptides, in addition to the well established NMR techniques for small peptides (2-4) one may also rely on the NMR parameters of the polypeptide side chain signals for detection of local conformational transition, intramolecular interactions and chemical modification effects, resulting not only from neighbouring amino acid residues, but also from residues which, while remote in the primary structure, become close to one another by the folding of the polypeptide backbone(5). 

A situation that arises from the intramolecular dynamics of A and completely distinct from apparent non-RRKM behaviour is intrinsic non-RRKM behaviour [9], By this, it is meant that A has a non-random P(t) even if the internal vibrational states of A are prepared randomly. This situation arises when transitions between individual molecular vibrational/rotational states are slower than transitions leading to products. As a result, the vibrational states do not have equal dissociation probabilities. In tenns of classical phase space dynamics, slow transitions between the states occur when the reactant phase space is metrically decomposable [13,14] on the timescale of the imimolecular reaction and there is at least one bottleneck [9] in the molecular phase space other than the one defining the transition state. An intrinsic non-RRKM molecule decays non-exponentially with a time-dependent unimolecular rate constant or exponentially with a rate constant different from that of RRKM theory. 

As discussed in section A3.12.2. intrinsic non-RRKM behaviour occurs when there is at least one bottleneck for transitions between the reactant molecule s vibrational states, so drat IVR is slow and a microcanonical ensemble over the reactant s phase space is not maintained during the unimolecular reaction. The above discussion of mode-specific decomposition illustrates that there are unimolecular reactions which are intrinsically non-RRKM. Many van der Waals molecules behave in this maimer [4,82]. For example, in an initial microcanonical ensemble for the ( 211 )2 van der Waals molecule both the C2H4—C2H4 intennolecular modes and C2H4 intramolecular modes are excited with equal probabilities. However, this microcanonical ensemble is not maintained as the dimer dissociates. States with energy in the intermolecular modes react more rapidly than do those with the C2H4 intramolecular modes excited [85]. 

In order to define how the nuclei move as a reaction progresses from reactants to transition structure to products, one must choose a definition of how a reaction occurs. There are two such definitions in common use. One definition is the minimum energy path (MEP), which defines a reaction coordinate in which the absolute minimum amount of energy is necessary to reach each point on the coordinate. A second definition is a dynamical description of how molecules undergo intramolecular vibrational redistribution until the vibrational motion occurs in a direction that leads to a reaction. The MEP definition is an intuitive description of the reaction steps. The dynamical description more closely describes the true behavior molecules as seen with femtosecond spectroscopy. 

Syntheses of alkenes with three or four bulky substituents cannot be achieved with an ylide or by a direct coupling reaction. Sterical hindrance of substituents presumably does not allow the direct contact of polar or radical carbon synthons in the transition state. A generally applicable principle formulated by A. Eschenmoser indicates a possible solution to this problem //an intermolecular reaction is complex or slow, it is advisable to change the educt in such a way. that the critical bond formation can occur intramolecularly (A. Eschenmoser, 1970). 

Two approaches to convergent steroid syntheses are based on the thermal opening of benzocyclobutenes to the o-quinodimethane derivatives (see p. 80 W. Oppolzer, 1978 A) and their stereoselective intramolecular Diels-Alder cyclizations. T, Kametani (1977 B, 1978) obtained (+ )-estradiol in a six-step synthesis. The final Diels-Alder reaction occurred regio- and stereoselectively in almost quantitative yield, presumably because the exo transition state given below is highly favored over the endo state in which rings A and D would stcrically inter-... 

The development of methods for aromatic substitution based on catalysis by transition metals, especially palladium, has led to several new methods for indole synthesis. One is based on an intramolecular Heck reaction in which an... 

To circumvent this difficulty, one has to take into account that the reactants themselves take part in intermolecular vibrations, which may bring them to distances sufficiently short so as to facilitate tunneling, as well as classical transition. Of course, such a rapprochement costs energy, but, because the intermolecular modes are much softer than the intramolecular ones, this energy is smaller than that required for the transition at a fixed intermolecular distance. 

The transition state for the rapid hydrolysis of the monoanion has been depicted as involving an intramolecular general acid catalysis by the carboxylic acid group, with participation by the anionic carboxylate group, which becomes bound at the developing electrophilic center... 

Each of the following molecules has been considered to be capable of some form of intramolecular catalysis of ester hydrolysis. For each reactant, indicate one or more mechanisms by which intramolecular catalysis might occur. Depict a transition-state arrangement that shows this catalysis. 

Substitution, addition, and group transfer reactions can occur intramolecularly. Intramolecular substitution reactions that involve hydrogen abstraction have some important synthetic applications, since they permit functionalization of carbon atoms relatively remote from the initial reaction site. ° The preference for a six-membered cyclic transition state in the hydrogen abstraction step imparts position selectivity to the process ... 

The selectivity observed in most intramolecular functionalizations depends on the preference for a six-membered transition state in the hydrogen-atom abstraction step. Appropriate molecules can be constmcted in which steric or conformational effects dictate a preference for selective abstraction of a hydrogen that is more remote from the reactive radical. 

It has been proposed that oxygen adds to the excited keto group [- (112)]. The rearrangement of the resulting hydroxyhydroperoxy diradical (112) could then proceed by intramolecular hydrogen abstraction involving a six-membered cyclic transition state, followed by fission of the former C —CO bond to form the unsaturated peracid (113) as the precursor of the final product. Such a reaction sequence demands a hydrogen atom in the J -position sterically accessible to the intermediate hydroperoxy radical. 

Three kinetically equivalent rate terms involving intramolecular participation are shown in Table 6-3 with representations of appropriate transition states (mechanisms). Differentiation among these possibilities can be difficult. 

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