Transactivation structure

Ruff, M., Gangloff, M., Wurtz, J.M. and Moras, D. (2000) Estrogen receptor transcription and transactivation structure-function relationship in... 

The viral protein Rev may also play a role in HIV-1 latency. Expression of the viral Rev protein is essential for the nuclear export of genomic RNA as well as unspliced and/or singly spliced transcripts (Cullen 2003), which are ultimately translated into structural, regulatory, and enzymatic viral proteins. Retention of Rev and Tat (viral transactivator proteins) transcripts in the nucleus of resting CD4h- T cells from HAART patients (Lassen et al. 2006) might be involved in the maintenance of post-integration latency in these cells. Importantly, this phenomenon is non-existent in activated T cells. 

The transactivation domains only make their accessibility evident in the dimer bound to the HRE. It is very probable that, in this way, the spatial structure (tertiary) optimizes itself so that the contact surfaces between the receptor and the other cofactors of transcription are formed. 

The absence of a transactivation-competent NF-kB heterodimer in the nucleus of latently infected resting memory CD4+ T cells could contribute to latency. Activation of the NF-kB pathway leading to migration of a transactivating heterodimer such as p50/p65 could allow viral reactivation. In the absence of induction, NF-kB p50-HDACl complexes constitutively bind the latent HIV-1 LTR (Williams et al, 2006). NF-kB p50 does not possess a transactivation domain. These p50-HDACl complexes induce histone deacetylation and repressive changes in chromatin structure of the HIV-1 LTR (Williams et al, 2006). Knockdown of p50 expression reduces HDACl binding to the latent HIV-1 LTR and induces RNA polymerase II recruitment (Williams et al, 2006). Concomitantly with HIV-1 transcriptional activation, the p65 subunit and different HATs are recruited to the viral promoter (Lusic et al, 2003 Thierry et al, 2004). 

Nuclear receptors exert their different transcriptional functions through interactions with and the recruitment of co-factors to responsive promoters. Co-factors are either positive or negative regulatory proteins and are classified as co-activators, which promote, or co-repressors, which attenuate the activity of nuclear hormone receptors [46]. The molecular mechanisms that regulate the mutually exclusive interactions of the nuclear receptor with either class of co-factors have been analysed by crystallographic studies. Functional and structural studies have shown that co-activators interact with the transactivation function (AF) of nuclear hormone receptors via short, leucine-rich motifs (LXXLL) termed NR boxes , thereby transducing hormonal signals to the basal transcription machinery [47]. 

Fig. 1.21. Structural and functional principles of transcription activators. Typical transcription activators of encaryotes possess a DNA-binding domain, an effector domain and a transactivating domain. An incoming signal is registered by the effector domain and transformed into a change in affinity for DNA. In the active state, the transcription activator is capable of binding to its cognate DNA-binding element. Protein-protein interactions with the transcription apparatus bound to the promoter mediate a stimnlation of transcription initiation.

The Ugand binding domain (section E in fig. 4.5) of the nuclear receptors harbors several functions. Apart from the specific binding site for the hormone, one finds further structural elements in this domain which mediates dimerization of the receptors as well as structural elements important for the ligand-mediated transactivation. 

A further structural element with transactivating function is localized the N-terminal A/B domain of the receptor. This region, termed AF-1, is structurally and functionally only partially characterized. 

DNA-binding transactivators typically have a distinct structural domain for specific DNA binding and one or more additional domains for transcriptional activation or for interaction with other regulatory proteins. Interaction of two regulatory proteins is often mediated by domains containing leucine zippers (Fig. 28-14) or helix-loop-helix motifs (Fig. 28-15). We consider here three... 

The effects of DNA-binding transactivators on Pol II are mediated by coactivator protein complexes such as TFIID or mediator. The modular structures of the transactivators have distinct activation and DNA-binding domains. Other protein complexes, including histone acetyltransferases such as GCN5-ADA2-ADA3 and ATP-dependent complexes such as SWI/SNF and NURF, reversibly remodel chromatin structure. 

Paolocci F, Robbins MP, Madeo L, Arcioni S, Martens S, Damiani F. 2007. Ectopic expression of a basic helix-loop-helix gene transactivates parallel pathways of proanthocyanidin biosynthesis. Structure, expression, analysis, and genetic control of leucoanthocyanidin 4-reductase and anthocyanidin reductase genes in Lotus corniculatus. Plant Physiol 143 504-516. 

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