Toxins, structure-function correlation

In our laboratory we first isolated the major lethal protein (termed Cobrotoxin) of non-enzymatic nature from the venom of Taiwan cobra Naja naja atra) in 1964 and subsequently purified and crystallized the protein. The primary structure and the disulfide linkages with various efforts by chemical modification and immunological methods in elucidation of the structure-function relationship of this important venom neurotoxin have since been accomplished. Structure-activity correlations have been drawn from chemical modification carried out on both pre- and post-synaptic neurotoxins. With recent advances in DNA recombination and protein engineering, we feel that the time is now ripe to apply these techniques to the isolation and characterization of the genes encoding these toxins. Detailed structural and site-specific mutational studies on the cDNA clones of neurotoxins of both types may complement our previous chemical modifications of the functional role of some amino acid residues in neurotoxins and lead to insight into the modes of action for these biologically active molecules. 

Barhanin et al. (26) chemically modified the side chains of several residues to correlate structure and function in As II. Their results established the importance of charged residues for the function of the toxin. They showed that Arg-13 is essential for binding to the sodium channels as well as for toxicity, while the aspartate, glutamate, and lysine residues in the N-terminal segment of the protein are... 

In a very broad overview of the structural categories one can state several statistical correlations with type of function. Hemes are almost always bound by helices, but never in parallel a//3 structures. Relatively complex enzymatic functions, especially those involving allosteric control, are occasionally antiparallel /3 but most often parallel a//3. Binding and receptor proteins are most often antiparallel /3, while the proteins that bind in those receptor sites (i.e., hormones, toxins, and enzyme inhibitors) are most apt to be small disulfide-rich structures. However, there are exceptions to all of the above generalizations (such as cytochrome cs as a nonhelical heme protein or citrate synthase as a helical enzyme), and when one focuses on the really significant level of detail within the active site then the correlation with overall tertiary structure disappears altogether. For almost all of the dozen identifiable groups of functionally similar proteins that are represented by at least two known protein structures, there are at least... 

Fig. 5. Correlation of ionene structure and inhibitory potency. Concentrations required to reduce toxin binding rate to 50% (/50) were determined, as described in the legend to Figure 4, for a variety of ionene bromides, and plotted as a function of the length of the unit segment.

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