Thymine structure

Figure 11-6. Structures of representative conical intersections Sj/Sq in the pyrimidine bases, uracil, thymine, and cytosine. Uracil structures (a,d) are taken from Ref. [147, 210]. Thymine structures (b,e) are taken from Ref. [152], Cytosine structures (c,f) are taken from Ref. [157]...

The water lattice may be an important element in forming the ordered thymine structure necessary for dimerization, as pointed out by Beukers and Berends.37 Thymine can crystallize from solution as a monohydrate (a real hydrate)38 in whose crystal lattice one thymine is directly above another. The influence of humidity upon dimer yield in dry films may be connected with monohydrate formation, and monohydrate formation in frozen solutions may be the reason for the almost theoretically maximum quantum yields for dimer formation.31 The possible existence of aggregates in frozen aqueous solutions is supported by a tenfold increase in purine phosphorescence at 44°K produced by the presence of 1% ethanol and by a blue shift of excitation and emission spectra.39... 

DNA is made up ot two intertwined strands. A sugar-phosphate chain makes up the backbone of each, and the two strands are joined by way of hydrogen bonds betwen parrs of nucleotide bases, adenine, thymine, guanine and cytosine. Adenine may only pair with thymine and guanine with cytosine. The molecule adopts a helical structure (actually, a double helical stnrcture or double helix ). 

MP2/6-31G calculations were performed for bonded and stacked structures of adenine-2,4-difluorotoluene complexes 152 [99CPL393] and for adenine with guanine or thymine [97JPC(B)3846]. Classical base pair structures of 152... 

As noted previously, RNA is structurally similar to DNA but contains ribose rather than deoxyribose and uracil rather than thymine. There are three major kinds of RNA, each of which serves a specific function. All three are much smaller molecules than DNA, and all remain single-stranded rather than double-stranded. 

Thymine, electrostatic potential map of, 1104 structure of, 1101 Thyroxine, biosynthesis of, 551 structure of. 1020 TIme-of-flight (TOP) mass spectrometry, 417-418 Titration curve, alanine, 1023 TMS, see Tetramethylsilane see Trimethylsilyl ether Tollens reagent, 701 Tollens test, 992... 

The secondary structure of DNA is shown in Figure B. This "double helix" model was first proposed in 1953 by James Watson and Francis Crick, who used the x-ray crystallographic data of Rosalind Franklin and Maurice Wilkins. Beyond that, they were intrigued by the results of analyses that showed that in DNA the ratio of adenine to thymine molecules is almost exactly 1 1, as is the ratio of cytosine to guanine ... 

Methotrexate (MTX, chemical structure shown in Fig. 1.) competitively inhibits the dehyrofolate reductase, an enzyme that plays an essential role in purine synthesis. The dehydrofolate reductase regenerates reduced folates when thymidine monophosphate is formed from deoxyuridine monophosphate. Without reduced folates cells are unable to synthesize thymine. Administration of N-5 tetrahydrofolate or N-5 formyl-tetrahydrofolate (folinic acid) can bypass this block and rescue cells from methotrexate activity by serving as antidote. 

The two strands of the nucleic acid DNA are held together by four organic bases. The structure of one of these bases, thymine, is shown below, (a) How many protons can this base accept (b) Draw the structure of each conjugate acid that can be formed, (c) Mark with an asterisk any structure that can show amphiprotic behavior in aqueous solution. 

Attached by a covalent bond to carbon atom 1 of the deoxyribose ring is an amine (and therefore a base), which may be adenine, A (22) guanine, G (23) cytosine, C (24) or thymine, T (25). In RNA, uracil, U (26), replaces thymine. The base bonds to carbon atom 1 of deoxyribose through the nitrogen of the —NH— group (printed in red) and the compound so formed is called a nucleoside. All nucleosides have a similar structure, which we can summarize as the shape shown in (27) the lens-shaped object represents the attached amine. 

The ability of DNA to replicate lies in its double-helical structure. There is a precise correspondence between the bases in the two strands. Adenine in one strand always forms two hydrogen bonds to thymine in the other, and guanine always forms three hydrogen bonds to cytosine so, across the helix, the base pairs are always AT and GC (Fig. 19.29). Any other combination would not be held together as well. During replication of the DNA, the hydrogen bonds, which are... 

The DNA structure involves two polyanionic phosphodiester strands linked together by hydrogen bonding of base pairs. The strands can be separated by a denaturation process (melting). The melting temperatnre increases with an increase in guanine (G)-cytosine (C) content, since this base pair possess three hydrogen bonds as compared to just two for the adenine (A)-thymine (T) pair. 

C13-0102. hi the 1950s, Edwin Chargaff of Columbia University studied the composition of DNA from a variety of plants and animals. He found that the relative amounts of different bases changed from one species to another. However, in every species studied, the molar ratios of guanine to cytosine and of adenine to thymine were found to be very close to 1.0. Explain Chargaff s observations in terms of the Watson-Crick model of DNA structure. 

Sulphonamides are structural analogues of PABA. They competitively inhibit the incorporation of PABA into dihydropteroic acid and there is some evidence for their incorporation into false folate analogues which inhibit subsequent metabolism. The presence of excess PABA will reverse the inhibitory action of sulphonamides, as will thymine, adenine, guanine and methionine. However, these nutrients are not normally available at the site of infections for which the sulphonamides are used. 

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