Substrate-bound complex, structure

M(VI) and M(IV) oxidation states. The M(V) state is generated by a one-electron reduction of the M(VI) state, or the one-electron oxidation of the M(IV) state, and occurs during the catalytic cycle—en route to the regeneration of the catalytically active state. Spectroscopic studies of the Mo—MPT enzymes, notably electron spin resonance (EPR) investigations of the Mo(V) state, have clearly demonstrated that the substrate interacts directly with the metal center (37). The first structural characterization of a substrate-bound complex was achieved for the DMSOR from Rhodobacter capsulatus DMS was added to the as-isolated enzyme to generate a complex with DMSO that was O-bound to the molybdenum (43). 

C. The Structure of the Substrate-Bound Complex and the Involvement of an Active Site Histidine... 

Despite its weakness, the anisotropy of the g tensor of iron-sulfur centers can be used to determine the orientation of these centers or that of the accommodating polypeptide in relation to a more complex system such as a membrane-bound complex. For this purpose, the EPR study has to be carried out on either partially or fully oriented systems (oriented membranes or monocrystals, respectively). Lastly, the sensitivity of the EPR spectra of iron-sulfur centers to structural changes can be utilized to monitor the conformational changes induced in the protein by different factors, such as the pH and the ionic strength of the solvent or the binding of substrates and inhibitors. We return to the latter point in Section IV. 

Sulfite reductase catalyzes the six-electron reduction by NADPH of sol" to and NO2 to NH3. In E. coli this enzyme is a complex structure with subunit composition 0 8)84 (Siegel et al, 1982). The enzyme active site is on the /3 subunit, which contains both a 4Fe 4S cluster and a siroheme prophyrin. Substrates and ligands have been found to bind to the siroheme. The a subunit binds NADPH and serves to shuttle electrons to the active site through bound FAD and FMN groups. Isolated )8 subunits can catalyze sulfite reduction in the presence of a suitable electron donor. 

The systems described in this chapter possess properties that define supramolecular reactivity and catalysis substrate recognition, reaction within the supermolecule, rate acceleration, inhibition by competitively bound species, structural and chiral selectivity, and catalytic turnover. Many other types of processes may be imagined. In particular, the transacylation reactions mentioned above operate on activated esters as substrates, but the hydrolysis of unactivated esters and especially of amides under biological conditions, presents a challenge [5.77] that chemistry has met in enzymes but not yet in abiotic supramolecular catalysts. However, metal complexes have been found to activate markedly amide hydrolysis [5.48, 5.58a]. Of great interest is the development of supramolecular catalysts performing synthetic... 

However, recent x-ray studies on p-hydroxybenzoate-p-hydroxybenzoate hydroxylase binary complex crystals clearly show the aromatic substrate is bound at the flavin 4a-5 edge and orthogonal to the isoalloxazine plane (29). Unless this binary complex structure is highly misinformative, it can be inferred that in the 02, p-hydroxy-benzoate, enzyme ternary active complex, oxygen transfer is in the 4a,5 region, not the la, 1 region of the bound FAD, which rules out la-OOH derivatives as important oxygenating intermediates for this enzyme. 

Kiihnel K, Blankenfeldt W, Tenter J et al (2006) Crystal structures of chloroperoxidase with its bound substrates and complexed with formate, acetate, and nitrate. J Biol Chem 281 23990-23998... 

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