Stable isomer, structure

The second application of the CFTI approach described here involves calculations of the free energy differences between conformers of the linear form of the opioid pentapeptide DPDPE in aqueous solution [9, 10]. DPDPE (Tyr-D-Pen-Gly-Phe-D-Pen, where D-Pen is the D isomer of /3,/3-dimethylcysteine) and other opioids are an interesting class of biologically active peptides which exhibit a strong correlation between conformation and affinity and selectivity for different receptors. The cyclic form of DPDPE contains a disulfide bond constraint, and is a highly specific S opioid [llj. Our simulations provide information on the cost of pre-organizing the linear peptide from its stable solution structure to a cyclic-like precursor for disulfide bond formation. Such... 

The hydrogen at C 8 (the one shown in the structural formulas) crowds the —SO3H group in the less stable isomer... 

Let us now return to the question of solvolysis and how it relates to the stracture under stable-ion conditions. To relate the structural data to solvolysis conditions, the primary issues that must be considered are the extent of solvent participation in the transition state and the nature of solvation of the cationic intermediate. The extent of solvent participation has been probed by comparison of solvolysis characteristics in trifluoroacetic acid with the solvolysis in acetic acid. The exo endo reactivity ratio in trifluoroacetic acid is 1120 1, compared to 280 1 in acetic acid. Whereas the endo isomer shows solvent sensitivity typical of normal secondary tosylates, the exx> isomer reveals a reduced sensitivity. This indicates that the transition state for solvolysis of the exo isomer possesses a greater degree of charge dispersal, which would be consistent with a bridged structure. This fact, along with the rate enhancement of the exo isomer, indicates that the c participation commences prior to the transition state being attained, so that it can be concluded that bridging is a characteristic of the solvolysis intermediate, as well as of the stable-ion structure. ... 

In order to predict the structure of the product, you must identify the factors that will tend to favor selective ketal formation. Consider selective carbonyl protonation first. Obtain energies and atomic charges, and display electrostatic potential maps of the alternative protonated ketones (protonated ketone A, protonated ketone B). Identify the more stable isomer. Compare geometries and draw whatever Lewis structures are needed to account for your data. Why is one isomer more stable than the other Is the more stable isomer also that in which the positive charge is better delocalized Will the more stable isomer undergo nucleophilic attack more or less easily than the other Explain. 

How many cis-trans stereoisomers of ///yo-inositol (Problem 4.49) are there Draw the structure of the most stable isomer. 

Since diazoates can be considered to be derived from oximes by substitution of nitrogen for the methine group, Hantzsch (1894) put forward the hypothesis that configurational isomerism was also occurring here. He therefore represented the isomeric diazoates by the structures 7.1 and 7.2, assigning the syn structure (7.1) to the labile diazoate and the anti (7.2) to the stable isomer. Nowadays the description recommended by IUPAC (1979) for such configurational isomers, namely (Z) instead of syn and (E) instead of anti, should be used. 

The molecular structures of the isolated polysulfide monoanions 8 with n=2-9 have been studied by density functional calculations and those of the smaller ions also by ab initio MO calculations. Compared to the neutral 8 molecules the extra electron occupies an antibonding orbital resulting in longer 88 bonds. The species 83 is bent and of C2V symmetry (a=115°) [140, 141]. 84 was calculated to be a planar ion of C2V symmetry (similar to the neutral molecule 84) but the planar C2h structure is only slightly less stable [140, 141]. The most stable isomer of 85 is a chain of Q symmetry sim-... 

Fig. 4 Calculated structures of the two most stable isomers of S7O2. Bond lengths in pm. The energies of the two structures A and B are almost identical (after [68])...

The most stable structures and formation energies of zinc thiocyanate complexes have been calculated by ab initio density functional methods. The formation energies of the linkage isomers [Zn(NCS)4]2. [Zn(NCS)2(SCN)2]2, and [Zn(SCK)4]2 were determined. A comparison of the formation energies indicated that [Zn(SCN)4]2 is the most stable isomer both in water and in dimethyl sulfoxide.567... 

Hobza, P., H. L. Selzle, and E. W. Schlag. 1993. New Structure for the Most Stable Isomer of the Benzene Dimer A Quantum Chemical Study. J. Phys. Chem. 97, 3937. 

Quantum chemical (AMI) calculations were performed on 24-cis and 2A-trans showing that the cA-isomer is more stable. The structures 24-cis and 24-trans represent the energetically favored conformers <1998H(48)1851>. 

The oxidation of NO to N02 may involve an intermediate having the formula N202. Describe the structure of this compound. It is believed that there is a less stable isomer that has lower symmetry. Draw the structure for that isomer. 

On a more qualitative level, the bonding in the more stable isomer lb can be explained on the basis of the general molecular orbital scheme for bent (C2v) metallocenes containing 14 valence electrons, as shown in Fig. 5. The localization of three electron pairs in bonding orbitals (lal, 2 i, 2b2) is primarily responsible for the Si-Cp interaction the absence of a silicon orbital of a2 symmetry imposes the presence of a ligand-based non-bonding orbital. Structural adjustment from D5d (ferrocene type) to C2v... 

S-37 (see above) it is also possible to prepare and to matrix-isolate the silicon species 124, 125, and 126, which again exist in a photoequilibrium. Our first entry to 1-silacyclopropenylidene (124) was the pulsed flash pyrolysis of 2-ethynyl-l,l,l-trimethyldisilane (123).71,72 Even though the structure of educt molecule 123 suggests formation of ethynylsilylene (125), the isolated product was 124. Obviously 125 had already thermally isomerized to the most stable isomer 124 before the products were condensed at 10 K. 

The numerous transformations of cyclooctatetraene 189 and its derivatives include three types of structural changes, viz. ring inversion, bond shift and valence isomerizations (for reviews, see References 83-85). One of the major transformations is the interconversion of the cyclooctatetraene and bicyclo[4.2.0]octa-2,4,7-triene. However, the rearrangement of cyclooctatetraene into the semibullvalene system is little known. For example, the thermolysis of l,2,3,4-tetra(trifluoromethyl)cyclooctatetraene 221 in pentane solution at 170-180 °C for 6 days gave three isomers which were separated by preparative GLC. They were identified as l,2,7,8-tetrakis(trifluoromethyl)bicyclo[4.2.0]octa-2,4,7-triene 222 and tetrakis(trifluoromethyl)semibullvalenes 223 and 224 (equation 71)86. It was shown that a thermal equilibrium exists between the precursor 221 and its bond-shift isomer 225 which undergoes a rapid cyclization to form the triene 222. The cyclooctatetraenes 221 and 225 are in equilibrium with diene 223, followed by irreversible rearrangement to the most stable isomer 224 (equation 72)86. 

This reaction also proceeds in the presence of hydrogen only thus, it may never predominate since under these conditions more rapid hydrogenation of the double bond competes very efficiently with it. Due to rapid double bond isomerization the product contains predominantly the most stable isomer 1-methylcyclopentene. The dependence of the selectivity of hydro-genative versus dehydrogenative cyclization on the structure of the starting hydrocarbon (Fig. 7) shows that methylcyclopentene (MCPe) is not the product of secondary dehydrogenation (55). 

Noth and Thorn reported the preparation of P4(NH)5[M(CO)5l4 with M = Cr and Mo, by thermal decomposition of P(NH2)3M(C0)5, and of P4(NH)5S4, through the reaction of Sg on the chromium adduct the mixed P4(NH)g[Cr(CO)5jjjS4 jj were identified during the process (62). Since the parent compound P4(NH)5 itself is still unknown, this exemplifies the possibility of obtaining new closo-structures, or less stable isomers of known ones, in a complexed form. 

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