Substitution solvation

A. Warshel, J. Aqvist, and S. Creighton, Proc. Natl. Acad. Sci., U.S.A., 86, 5820 (1989). Enzymes Work by Solvation Substitution Rather than by Desolvation. 

Warshel, A., Aqvist, J. and Creighton, S. (1989). Enzymes work by solvation substitution rather than by desolvation. Proc. Natl. Acad. Sci. USA 86, 5820-5824... 

The desolvation theory has recently been extended by a solvation-substitution theory [101], It is based on the assumption that the enzyme would not be able to strip off the water which is surrounding the substrate to effect a desolvation , because this would be energetically unfavorable. Instead, the solvent is displaced by the environment of the active site of the enzyme thereby affecting solvation substitution . Thus, the (often) hydrophobic substrate replaces the water with the (often) hydrophobic site of the enzyme which favors the formation of the... 

Rate increases with increasing po larity of solvent as measured by its dielectric constant e (Section 8 12) Polar aprotic solvents give fastest rates of substitution solvation of Nu IS minimal and nucleophilicity IS greatest (Section 8 12)... 

Once m the organic phase cyanide ion is only weakly solvated and is far more reactive than It IS m water or ethanol where it is strongly solvated by hydrogen bonding Nude ophilic substitution takes place rapidly... 

Pesticide Solvent. The majority of organic fungicides, insecticides, and herbicides (qv) are soluble in DMSO, including such difficult-to-solvate materials as the substituted ureas and carbamates (see Fungicides, agricultural Insect control technology Pesticides). Dimethyl sulfoxide forms cosolvent systems of enhanced solubiUty properties with many solvents (109). 

A significant advance in the synthesis of monoorganotin trihaHdes was the preparation of P-substituted ethyl tin trihaHdes in good yield from the reaction of stannous chloride, hydrogen haHdes, and a,P-unsaturated carbonyl compounds, eg, acryHc esters, in common solvents at room temperature and atmospheric pressure (153,154). The reaction is beHeved to proceed through a solvated trichlorostannane intermediate (155) ... 

This equation is a reasonable model of electrokinetic behavior, although for theoretical studies many possible corrections must be considered. Correction must always be made for electrokinetic effects at the wall of the cell, since this wall also carries a double layer. There are corrections for the motion of solvated ions through the medium, surface and bulk conductivity of the particles, nonspherical shape of the particles, etc. The parameter zeta, determined by measuring the particle velocity and substituting in the above equation, is a measure of the potential at the so-called surface of shear, ie, the surface dividing the moving particle and its adherent layer of solution from the stationary bulk of the solution. This surface of shear ties at an indeterrninate distance from the tme particle surface. Thus, the measured zeta potential can be related only semiquantitatively to the curves of Figure 3. 

It is also of significance that in the dilute gas phase, where the intrinsic orientating properties of pyrrole can be examined without the complication of variable phenomena such as solvation, ion-pairing and catalyst attendant on electrophilic substitution reactions in solution, preferential /3-attack on pyrrole occurs. In gas phase t-butylation, the relative order of reactivity at /3-carbon, a-carbon and nitrogen is 10.3 3.0 1.0 (81CC1177). 

This is opposite from the order in solution as revealed by the pK data in water and DMSO shown in Table 4.14. These changes in relative acidity can again be traced to solvation effects. In the gas phase, any substituent effect can be analyzed directly in terms of its stabilizing or destabilizing effect on the anion. Replacement of hydrogen by alkyl substituents normally increases electron density at the site of substitution, but this effect cannot be the dominant one, because it would lead to an ordering of gas-phase acidity opposite to that observed. The dominant effect is believed to be polarizability. The methyl... 

Stereochemical analysis can add detail to the mechanistic picture of the Sj l substitution reaction. The ionization mechanism results in foimation of a caibocation intermediate which is planar because of its hybridization. If the caibocation is sufficiently long-lived under the reaction conditions to diffirse away from the leaving group, it becomes symmetrically solvated and gives racemic product. If this condition is not met, the solvation is dissymmetric, and product with net retention or inversion of configuration may be obtained, even though an achiral caibocation is formed. The extent of inversion or retention depends upon the details of the system. Examples of this effect will be discussed in later sections of the chapter. 

Polarity. The increase in the polarity of the plasticizer (e.g. existence of polar groups, substitution of aryl groups by alkyl ones) reduces softening efficiency, worsens low-temperature properties of the plasticized polymers, improves solvation, and reduces extractability by aliphatic solvents. 

Other measures of nucleophilicity have been proposed. Brauman et al. studied Sn2 reactions in the gas phase and applied Marcus theory to obtain the intrinsic barriers of identity reactions. These quantities were interpreted as intrinsic nucleo-philicities. Streitwieser has shown that the reactivity of anionic nucleophiles toward methyl iodide in dimethylformamide (DMF) is correlated with the overall heat of reaction in the gas phase he concludes that bond strength and electron affinity are the important factors controlling nucleophilicity. The dominant role of the solvent in controlling nucleophilicity was shown by Parker, who found solvent effects on nucleophilic reactivity of many orders of magnitude. For example, most anions are more nucleophilic in DMF than in methanol by factors as large as 10, because they are less effectively shielded by solvation in the aprotic solvent. Liotta et al. have measured rates of substitution by anionic nucleophiles in acetonitrile solution containing a crown ether, which forms an inclusion complex with the cation (K ) of the nucleophile. These rates correlate with gas phase rates of the same nucleophiles, which, in this crown ether-acetonitrile system, are considered to be naked anions. The solvation of anionic nucleophiles is treated in Section 8.3. 

Planar-octahedral equilibria. Dissolution of planar Ni compounds in coordinating solvents such as water or pyridine frequently leads to the formation of octahedral complexes by the coordination of 2 solvent molecules. This can, on occasions, lead to solutions in which the Ni has an intermediate value of jie indicating the presence of comparable amounts of planar and octahedral molecules varying with temperature and concentration more commonly the conversion is complete and octahedral solvates can be crystallized out. Well-known examples of this behaviour are provided by the complexes [Ni(L-L)2X2] (L-L = substituted ethylenediamine, X = variety of anions) generally known by the name of their discoverer I. Lifschitz. Some of these Lifschitz salts are yellow, diamagnetic and planar, [Ni(L-L)2]X2, others are blue, paramagnetic, and octahedral, [Ni(L-L)2X2] or... 

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